Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_2889 |
Symbol | |
ID | 7860421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 3224374 |
End bp | 3225495 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 643866987 |
Product | PDZ domain-containing protein |
Protein accession | YP_002882896 |
Protein GI | 229821370 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3480] Predicted secreted protein containing a PDZ domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00716202 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAGAGA ATGGGCGGGT GGTCACGCGC ACGTACCGGA ACATCCCCAT GCCGCGATCG TCGCTCTCGC CGCGCAGCGT GCTGCTCGCG GCCAGCGGTC TCGCGACGTT CGTCCTGCTC GCCGCGATCC TCGTCGTGCC GGCGCCGTAC GCGATCGAGC AGCCCGGGCC GACCGTCGAC ACGCTCGGGG AGGTCGACGA CGTCGAGCTC ATCACGATCC CGGACGCCGA GACGTTCCCC AGCGAGGGGC AGCTGCGCCT GACGACCGTG TCGGTCGCCG GAGGCCCGGG CTTCCCGGTC GATGCGGCGG ATGTCGTGCA GGGCTGGCTG TCCTCCGCCG TCGCCGTCGT CCCGGTCGAG AGCGTCTACC AGCGCGGCGT GAGCCGTGAG GAGCTGCAGT CCACGTCGCA GGCGCAGATG ACGACGTCGC AGGAGAACGC GACGGCTGCC GCCCTCACCG AGCTGGGCTA CGAGGTGCCG ACGGTGCTGA CCGTGAGCGC GGCGGTCCCG GACTCCGGGT CGGACGGCGT CGTCGAGCCG GGCGACGTCG TCACGTCGAT CCAGGCGCCG GACGGCCCGC TCGTGCCGAC GGAGACGTTC CCGGACCTCA CGCAGGTGCT CGACGGCGTC GCCCCCGGTT CCAGCGTCGC GCTCGGCGTC GAGCGCGACG GCGAGCCCGA GACCCTCGAC GTCGTGACCG GCGACGACGG CAACGGCGGC AGCGTGCTCG GCGTGCTCAT CGACCCGACG TTCACGTTCC CGATCGAGGT CGACATCGAG ATCCAGGACA TCGGCGGGCC GAGTGCGGGC ACGATGTTCG CGCTCGGGAT CATCGAGCGG CTCACGCCGG GCGACTCCAC CGGCGGCGAG ATCATCGCGG GGACCGGCAC GATCGACCTG TCCGGCGAGG TCGGCGCGAT CGGCGGGATC GTGCAGAAGC TGCATGGGGC TCAGCGCGAC GGAGCCGGGT GGTTCCTCGC CCCGGCCGCC AACTGCGAGC AGGTCGTCGG GAACGTCCCG GAGGGTCTGC AGGTCGTGCG CGTGGCGACG CTGTCCGACG CACGGGACGC CGTCGAGGCG ATCGGGGCCG GCGACACCGC CGACCTGCCC AGCTGCTCCT GA
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Protein sequence | MPENGRVVTR TYRNIPMPRS SLSPRSVLLA ASGLATFVLL AAILVVPAPY AIEQPGPTVD TLGEVDDVEL ITIPDAETFP SEGQLRLTTV SVAGGPGFPV DAADVVQGWL SSAVAVVPVE SVYQRGVSRE ELQSTSQAQM TTSQENATAA ALTELGYEVP TVLTVSAAVP DSGSDGVVEP GDVVTSIQAP DGPLVPTETF PDLTQVLDGV APGSSVALGV ERDGEPETLD VVTGDDGNGG SVLGVLIDPT FTFPIEVDIE IQDIGGPSAG TMFALGIIER LTPGDSTGGE IIAGTGTIDL SGEVGAIGGI VQKLHGAQRD GAGWFLAPAA NCEQVVGNVP EGLQVVRVAT LSDARDAVEA IGAGDTADLP SCS
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