| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_2853 |
|---|
| Symbol | |
|---|
| ID | 7860384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 3189213 |
|---|
| End bp | 3189800 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643866950 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_002882860 |
|---|
| Protein GI | 229821334 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.597651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGGCGG CGATGCAGGT CTTCGGGTCG AAGGGCTACC ACGCGGGCTC CCTGGCCGAC
GTGGCGGAGC AGGTCGGCAT CACGCAGGCC GGTGTCCTGC ACCACTTCGG TTCCAAGGAC
CTCCTGCTGC AGGAGGTGCT CCGCCTGCGT GACCGGATCG ACGTCGCGGA CGTCGAAGGT
CACCACATGC CCGGCGGCCG GGGCATGTTC AGCCACCTCG AGCGGACGGC CGAGAAGAAC
GCGCGACGGC GGGGCGTCGT GCAGGCGTAC ACCGTGCTGA CCGCGGAGGC GGTCACGGAC
GGGCACTCGG CGAGCGACTG GGCGCGGGAG AGGTTCGCCG TGCTCCGCGC GGAGATCGTG
ACGGCGCTGC GCGACGCCGC TGCCGACGGC GGCGGGCCCA CGCCGTCGGA GGAGCGGCTG
TCCCACGCGG CGAGCTCGGT GATCGGGGTG ATGGACGGGC TGCAGATCCA GTGGCTGCTG
GACCCGGACG CCGTCGACCT GTCGGCCGCG ACCGCGTTCG CCATCGACGC CGTGCTCGCC
ACCGTGCTCG ACCGACCCGG CCCGACCGTC CGGCTCGACG TCGACTGA
|
|---|
| Protein sequence | MQAAMQVFGS KGYHAGSLAD VAEQVGITQA GVLHHFGSKD LLLQEVLRLR DRIDVADVEG
HHMPGGRGMF SHLERTAEKN ARRRGVVQAY TVLTAEAVTD GHSASDWARE RFAVLRAEIV
TALRDAAADG GGPTPSEERL SHAASSVIGV MDGLQIQWLL DPDAVDLSAA TAFAIDAVLA
TVLDRPGPTV RLDVD
|
|---|
| |