| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1611 |
|---|
| Symbol | |
|---|
| ID | 7858807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 1852739 |
|---|
| End bp | 1853365 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643865698 |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_002881629 |
|---|
| Protein GI | 229820103 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.548364 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGA GCGTGATGAT CGTGGACGAC CACGAGGTCG TCCGCCGCGG GATCGCCGAC
ATGGTCGACG CGGCGGGGGA CCTGCGCGTC GTGGCCGAGG CGGGATCGGT CGCCGACGCC
GTGCGGCGGG GGACCCTGAC CCGGCCGGAG GTCGCGCTCG TCGACCTCCA GCTGCCGGAC
GGCACGGGGA TCGAGGTCAT CCGCCGGCTG GCGGACGAGA GCTCCGACAC GCGGTGCGTC
GTCCTGACGT CGTTCGACGA CGACGACGCG CTCGCCTCCG CGATCGAGGT CGGGGCACGC
GCCTACGTCC TCAAGACGGT GCGCGGCGCG GAGATCGTCG ACGTGGTCCG GGCCGTCGCG
GCCGGGCGTG TGCTGCTGGA CGAGCGCAGC CTGACCCGGC GTCGTGCGGC GCACGAGGAT
CCGACGTCGG CGCTCACCCC GAGCGAGCGC CGCGTGCTCG AGCTGGTCGC CGAGGGGCTG
ACCAACCGCG ACATCGCGGA GCGACTCGGT GTGGCCGAGA AGACGGTCAA GAACCACGTG
ACGTCGATGC TGTCGAAGAT GGGGCTCCAG CGCCGCACCC AGGCCGTCGC CTGGGTCGCC
GGGCAGCGCT CCACCACCTG GCGCTAG
|
|---|
| Protein sequence | MPTSVMIVDD HEVVRRGIAD MVDAAGDLRV VAEAGSVADA VRRGTLTRPE VALVDLQLPD
GTGIEVIRRL ADESSDTRCV VLTSFDDDDA LASAIEVGAR AYVLKTVRGA EIVDVVRAVA
AGRVLLDERS LTRRRAAHED PTSALTPSER RVLELVAEGL TNRDIAERLG VAEKTVKNHV
TSMLSKMGLQ RRTQAVAWVA GQRSTTWR
|
|---|
| |