| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1463 |
|---|
| Symbol | |
|---|
| ID | 7860932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 1669721 |
|---|
| End bp | 1671016 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643865550 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002881483 |
|---|
| Protein GI | 229819957 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.140428 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCCGG AGGACGTCCT GGACCACGCG ACGTCGTCCG CCCGACCGAC GGCTCCCCCA
CGCCCCGCCC GCGGCCTCGG CCGGGCCATC GCCTCGCTCC GCGGCAACCG GCCCTTCCTC
CTGCTCTGGC TGTCGAACCT CTTCTTCTTC GGCGGCGCCT GGACGCAGAC GCTGATCCTC
GGCTGGCTCG TGTTCGAGAC CACCGGCTCG GAGTTCCTGC TCGCCGTCTT CACCGCCGTC
CGGCTCGCGC CGCTCCTGCT CGGCCCGCTG GCCGGCGTCC TCTCGGACCG GTTCGACCGC
ATGCGCCTCC TGCTGGTCGC CGGGACGTGG GCGTTCGTGG CCGTGGCCGC GCTGGCCGCG
GCGGTGTCGC TTGCCACGGT GCCCTACTGG GCGCTCCTCG TCGGCGGCCT GGCGATCGGG
CTCGCGCAGT CGCCGTCGCA GCCTGCGCGC TCCTCTCTCG TGCTCGACCT CGTGGGCCGC
GACAACCTCA GCAACGCCAA CGCTCTCAAC TCGATGGCCA TGAACATGAC GCAGGTCATC
GGCCCGGCCA TCGGCGGTGC GCTGATCAGC ACCCTCGGGG CACCGGCCGC CCTGTGGATC
TCCTCCGCGT GGTACGCCGT CTCGCTCGCG CTCCTCTGGC CGCTGCGACG CGTCGGTCGC
ACCCGCAGGG CAGCGCCCGA GGCAGTGGTG CGCATGCTTG TCGGCGGCTT CCGCACCATC
GCCGCGAACC GCCTCGCGTC CGCCGTCCTG CTCGTCACCC TCGCCGCAAA CATCCTCATC
TGGCCGGTCT TCCAGTCGTT CATGCCCGTG TTCGCCGGCG AGGTCCTCAG CCTCGACGCC
TCCGGCCTCG GCTGGCTCCT CACGTGCAGC GGGATCGGCG GGCTCGTGGG CTCGATCGTC
ATCGCCGCCC TCGGCGACTT CCGGTTCAAG GGCGGGCTCT TCGTGATCGG CACCGGGGTG
TGGGGGGCGC TGTGGGCGCT GTTCGCGCTG TCACACTCGG TCGGCCTGTC GTTCGCGCTC
ATGGCCGGCA TCGGGCTCGC GAGCGCCGCC TTCGGCGTCC TCCAGACCAC GCTTTTGCTC
ATGACCACGG AGCCCGCCGT CCACGGCCGG GCCCTGGGTC TGCAGGAGCT CGCGATCGGT
GCGATCCCGG TCGCGTCGCT CGCCCTCGGA GCGATCGCCG AGGTGGTCGG CGTCGGCGCG
ACGTCGTTCG TCAGCGCCCT GCTGCTCGTG GCGGCGATGG CGCTGCTCGC CGTCCGCGTG
CCGCAGCTCG TCCGCTACAG CGGCGTCCAG GAGTAG
|
|---|
| Protein sequence | MPPEDVLDHA TSSARPTAPP RPARGLGRAI ASLRGNRPFL LLWLSNLFFF GGAWTQTLIL
GWLVFETTGS EFLLAVFTAV RLAPLLLGPL AGVLSDRFDR MRLLLVAGTW AFVAVAALAA
AVSLATVPYW ALLVGGLAIG LAQSPSQPAR SSLVLDLVGR DNLSNANALN SMAMNMTQVI
GPAIGGALIS TLGAPAALWI SSAWYAVSLA LLWPLRRVGR TRRAAPEAVV RMLVGGFRTI
AANRLASAVL LVTLAANILI WPVFQSFMPV FAGEVLSLDA SGLGWLLTCS GIGGLVGSIV
IAALGDFRFK GGLFVIGTGV WGALWALFAL SHSVGLSFAL MAGIGLASAA FGVLQTTLLL
MTTEPAVHGR ALGLQELAIG AIPVASLALG AIAEVVGVGA TSFVSALLLV AAMALLAVRV
PQLVRYSGVQ E
|
|---|
| |