| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0875 |
|---|
| Symbol | |
|---|
| ID | 7860239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 975376 |
|---|
| End bp | 976701 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643864956 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002880898 |
|---|
| Protein GI | 229819372 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00780765 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0882707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCCCA CGTTCAGCTC GCTGAGGTAC TACAACTACC GCCTGTGGTT CGCCGCCGCG
CTGGTGGCGA ACATCGGTAC CTGGATGCAG CGGGTCGCGC AGGACTGGGT CGTGCTCACG
GACCTCAGCG ACAACTCGGG TCTCGCCGTC GGCATCGTGA CGGCGCTGCA GTTCCTCCCG
GTGCTCCTCG TGAGCCCGTA CGCGGGCGTC CTCGCGGACC GCCTGCCCCG CCGTCAGACG
CTCATGGCGA CGCAGGGTGC GATGGGTCTG CTCGCGGCGG GCCTTGGCGT GCTCGTCCTC
TCCGGCCACG CCGAGCTGTG GCACGTGTAC GTGTTCGCGC TGCTGCTCGG CGTCGTGACG
GCGCTCGACA ACCCCGTCCG CCAGACGTTC GTCGCCGAGA TGGTGCCGCC GGACGGCCTG
CCGAACGCCG TCGGTCTCAA CAGCGCGTCG TTCAACGCGG CCCGCCTCGT CGGGCCGGGC
GTCGCGGGCC TGCTCATCGC CGTCGTCGGC TCGGGCTGGC TGTTCGTCAT CAACGCGGTG
ACGTTCGCGC TCACGGTATT CGTGCTCACG CGCATGCGGA CGGCGGAGCT CACGCCGATG
CCGCTCGCGA AGCGAGGGAA GGGTCAGATC CGGGAGGGCC TGCGCTACGT GCGCCGACGC
TCGGACATCC TCGTGATCAT GGCCGTGGTC TCGGTGATCA GCGCGTTCGG CCTCAACTTC
CAGCTGACGA GCGCCGTCAT GGCGCGCAAC GAGTTCGGGA TGGGCGCCGG CGAGTACGGC
ATCCTCGGCT CGATCCTCGC GATCGGGTCG CTGACCGGGG CGCTGCTCGC GGCCCGGCGC
AAGCAGCCGC GCGTGCGGCT CGTGGTCGGG TCCGCGCTGG GCTTCGGGAT CGCGTCCGGG
GCGATGGCGC TCATGCCGAC GTACTGGACC TACGCGATCT CCGCGATCCC GGTGGGCTTC
TTCACGCTAA CGATGATCAC GGCCGCGAAC ACGGCGATCC AGATGTCCAC GGACCCGATC
GTGCGCGGAC GCGTGATGAG CCTGTACCTC ATGGTGTTCC TCGGGGCGAC GCCGATCGGC
TCGCCCATCG TCGGCTGGAT CGCGGAGCAC TGGGGGCCCC GCTGGTCGAT CGGCGTCGGC
TCGATCGCCG CGATCGTCGT CGCGCTCGGT GCCGCTGCCT ACGCGATGCG CGCATGGAAG
GTCCGCGTGA CGTACGAGTC CGAGCCGCGC CGCCGTTTCG TGCTGTCGCG CGCCGCGCAG
GAACGCCTCG CCACCCGCGA CGCTCTGGAG CTCGACGACG CCGGCGAGCG CGCCAGCGCG
GCCTGA
|
|---|
| Protein sequence | MSPTFSSLRY YNYRLWFAAA LVANIGTWMQ RVAQDWVVLT DLSDNSGLAV GIVTALQFLP
VLLVSPYAGV LADRLPRRQT LMATQGAMGL LAAGLGVLVL SGHAELWHVY VFALLLGVVT
ALDNPVRQTF VAEMVPPDGL PNAVGLNSAS FNAARLVGPG VAGLLIAVVG SGWLFVINAV
TFALTVFVLT RMRTAELTPM PLAKRGKGQI REGLRYVRRR SDILVIMAVV SVISAFGLNF
QLTSAVMARN EFGMGAGEYG ILGSILAIGS LTGALLAARR KQPRVRLVVG SALGFGIASG
AMALMPTYWT YAISAIPVGF FTLTMITAAN TAIQMSTDPI VRGRVMSLYL MVFLGATPIG
SPIVGWIAEH WGPRWSIGVG SIAAIVVALG AAAYAMRAWK VRVTYESEPR RRFVLSRAAQ
ERLATRDALE LDDAGERASA A
|
|---|
| |