Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6632 |
Symbol | |
ID | 4308511 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008385 |
Strand | - |
Start bp | 39249 |
End bp | 41807 |
Gene Length | 2559 bp |
Protein Length | 852 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638147771 |
Product | conjugal transfer protein TrbE |
Protein accession | YP_771709 |
Protein GI | 115345524 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0411416 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGAAG CAATCGCAAT TGCCATTGCT GTGCTCGGTG CGGTTCTGTT GCTCATCCTC TTTGCCCGCA TCCGGGCTGT CGATGCCGAG CTGAAGCTCA AGAAGCATCG CGCCAAGGAT GCCGGCCTGG CCGATCTGCT CAATTACGCC GCCGTGGTCG ATGACGGCGT GATCGTGGGC AAGAACGGCT CCTTTATGGC CGCCTGGCTG TACAAGGGGG ATGACAACGC CAGCAGCACC GAGGAACAGC GGGAAATGGT GTCGTTCCGC ATCAACCAGG CCCTGGCGGG CCTGGGGAAC GGCTGGATGG TGCATGTCGA TGCTGTGCGT CGGCCTGCGC CGAACTACTC GGAGCGGGGC GTGTCATCGT TCCCCGACTC CGTTTCCTTC GCCATTGACG AGGAACGCCG GCGCTTGTTC GAGGGCCTGG GCGCGATGTT CGAGGGCTAC TTTGTCCTGA CCGTCACGTG GTTCCCGCCA GTGCTGGCCC AGCGCAAGTT TGTCGAACTC ATGTTCGATG ACGATGCGGT GGCTCCCGAC CATACGGCGC GCACTACGGG CCTGATTGCG CAGTTCAAGC GCGAGATCAC CAGCCTGGAA TCGCGCCTGT CCTCGGCGGT CAAGATGACG CGCCTGCGCG GCCAAAAAGT CGTGTCGGAA GAGGGCAGGG AAGTCACGCA CGATGACTTC CTGAGCTGGT TGCAGTTCTG CGTGACGGGC CTCCATCACC CGGTCATGCT GCCCAGCAAT CCGATGTACC TCGATGCGGT AATCGGCGGG CAAGAGCTGT GGGGCGGCGT CGTGCCCAAG ATCGGGCGCA AGTTCATCCA GGTGGTCGCC ATCGAAGGCT TCCCCTTGGA GTCAACGCCT GGGGTGCTCT CGGCCCTGGC CGAGCTGCCC AGCGAATACC GCTGGTCGAG CCGCTTCATC TTCATGGATC AGCACGAGTC CTTGAAGCAC CTGGACAAGT TCCGCAAGAA GTGGAAGCAG AAGATTCGCG GCTTCTTCGA TCAGGTGTTC AACACGAATA CCGGCTCGAT CAACCAGGAC GCGGCCGCGA TGGTCGGCGA CGCCGAGGCG GCCATCGCCG AGGTCAACAG CGGCTTGGTG GCGGCCGGCT ACTACACCAG CGTGGTCGTG CTGATGGACG AGGATCGGGA GCGCCTGGCG GCCTCCGCGC TCCTGGTCGA GAAGGCCGTC AACCGCCTGG CCTTCGCGGC CCGTATCGAG ACGATCAACA CGCTCGATGC GTACCTGGGC AGCTTGCCCG GCCACGGCGT CGAGAACGTG CGCCGGCCGC TCATCAACAC GATGAACCTG GCCGACCTGC TGCCGACAAG CTCGATCTGG ACGGGCAGCG CCACGGCTCC GTGCCCGATG TACCCGCCGC TGTCGCCGGC GCTCATGCAC TGCGTGACGG TGGGCGCTAC GCCGTTCCGC CTGAACCTGC ACGTGCGCGA CCTGGGCCAC ACCTTCATGT TCGGCCCGAC CGGCGCAGGC AAATCGACGC ACCTGGGCAT CATCGCCGCG CAGCTCCGTC GCTACGCCGG CATGTCGATC TACGCCTTCG ACAAGGGCAT GTCGATGTAC CCACTCGCGG CCGGCATCCG CGCGGCCACG AAGGGCAAGA GCGGCCTGCA TTTCACGGTG GCCGCCGACG ATGACCGCCT GGCGTTCTGC CCGCTCCAGT TCCTCGAAAC GAAGGGGGAT AGGGCCTGGG CGATGGAGTG GATCGACACC ATCCTGGCGT TGAACGGCGT CAACACCACG CCGGCGCAGC GCAACGAGAT CGGCAACGCG ATCATGAGCA TGCACGCCAG CGGCGCGCGC ACGCTCTCCG AGTTCTCGGT GACGATTCAG GACGAGGCGA TCCGCGAGGC CATCAAGCAG TACACGGTGG ACGGCTCGAT GGGCCACCTG CTCGACGCCG AAGAGGACGG CCTGTCGCTG TCCGACTTCA CGGTGTTCGA GATCGAAGAG CTGATGAACC TGGGCGAGAA GTTCGCGCTG CCGGTGCTGC TCTACCTGTT CCGCCGCATC GAGCGCGCAC TGAAAGGCCA GCCCTCCGTC ATCATCCTGG ACGAAGCCTG GTTGATGCTG GGCCACCCCG CGTTCCGCGC CAAGATCAGG GAATGGCTCA AGGTGCTGCG CAAGGCCAAC TGCCTTGTGC TGATGGCGAC GCAAAGCCTC TCCGACGCGG CCAACTCGGG CATCTTGGAC GTGATCGTGG AATCGACCGC GACCAAGATT TTCCTGCCCA ACGTCTACGC CAGGGATGAG GACACATCGG CGCTCTATCG CCGTATGGGC CTCAACGCGC GTCAGATCGA AATCCTGGCG ACTGCCATTC CGAAGCGTCA GTACTACTAC GTCTCGGAGA ACGGCCGCCG TCTCTATGAC CTTGCCCTGG GGCCGATGGC CCTGGCCTTC GTCGGTGCGT CCGACAAGGA ATCGGTCGCC ACCATCAAGA GCCTCGAAGC CAAGTTCGGC CACGAATGGG TGCATGAGTG GCTGGCCGGC CGTGGGCTGA ATCTCAACGA CTACCTGGAG GCCGCATGA
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Protein sequence | MIEAIAIAIA VLGAVLLLIL FARIRAVDAE LKLKKHRAKD AGLADLLNYA AVVDDGVIVG KNGSFMAAWL YKGDDNASST EEQREMVSFR INQALAGLGN GWMVHVDAVR RPAPNYSERG VSSFPDSVSF AIDEERRRLF EGLGAMFEGY FVLTVTWFPP VLAQRKFVEL MFDDDAVAPD HTARTTGLIA QFKREITSLE SRLSSAVKMT RLRGQKVVSE EGREVTHDDF LSWLQFCVTG LHHPVMLPSN PMYLDAVIGG QELWGGVVPK IGRKFIQVVA IEGFPLESTP GVLSALAELP SEYRWSSRFI FMDQHESLKH LDKFRKKWKQ KIRGFFDQVF NTNTGSINQD AAAMVGDAEA AIAEVNSGLV AAGYYTSVVV LMDEDRERLA ASALLVEKAV NRLAFAARIE TINTLDAYLG SLPGHGVENV RRPLINTMNL ADLLPTSSIW TGSATAPCPM YPPLSPALMH CVTVGATPFR LNLHVRDLGH TFMFGPTGAG KSTHLGIIAA QLRRYAGMSI YAFDKGMSMY PLAAGIRAAT KGKSGLHFTV AADDDRLAFC PLQFLETKGD RAWAMEWIDT ILALNGVNTT PAQRNEIGNA IMSMHASGAR TLSEFSVTIQ DEAIREAIKQ YTVDGSMGHL LDAEEDGLSL SDFTVFEIEE LMNLGEKFAL PVLLYLFRRI ERALKGQPSV IILDEAWLML GHPAFRAKIR EWLKVLRKAN CLVLMATQSL SDAANSGILD VIVESTATKI FLPNVYARDE DTSALYRRMG LNARQIEILA TAIPKRQYYY VSENGRRLYD LALGPMALAF VGASDKESVA TIKSLEAKFG HEWVHEWLAG RGLNLNDYLE AA
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