Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_6627 |
Symbol | |
ID | 4308506 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008385 |
Strand | - |
Start bp | 34851 |
End bp | 35615 |
Gene Length | 765 bp |
Protein Length | 254 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638147766 |
Product | conjugal transfer protein TrbJ |
Protein accession | YP_771704 |
Protein GI | 115345519 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 0.331539 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCCGA AGTTTTTAGC CGCTAAATTG GCCCTCGTCA TTGCTGTTTC GAGCACGCTG GCGGTCACAC CTGTGCAGGC TGGCATCCCC GTCATCGACG GCACCAACCT GTCGCAGAAC ATCATGACGG CCATCGAATC GGTGGCCCAG ACGCTCAAGC AAATTGAGCA GTACAGCACC CAGCTCCAGC AGTATCAAAA CCAACTCCAG AACACGATGG CCCCGGCCGC GTATATCTGG GATCAGGCGC AATCGACCAT CAACGGGTTG ATGAACGCGG TCAACACGCT GGATTACTAC AAGACCCAAC TCGGCAGCCT GGACAGCTAC ATCGGCAAGT TCCAGGACGT GAACTACTAC AAGAACTCGC CGTGCTTTAC GGCGGCAGGG TGCTCCGACG CGGAACGCGC AGCACTTCGG AATGTGGCCC AGCTCGCGAG CGAGTCGCAG AAGAAGGCCA ACGATGCCTT GTTCAAGGGC CTCGATAGGC AGCAAACGAA TCTCACGGCC GATGCAGCGA CGTTGCAGCG TCTTCAATCG GCAGCGCAGG GCGCGCAGGG CCAAATGCAG GCCATCGGCT ACGCCAACCA GCTCGCCAGC CAGCAGGCCA ACCAGCTCTT GCAGATTCGT GGCCTGCTGA TCGCGCAGCA GAACGCGATG GCAACCAAGA TGCAGGCCGA CGCCGACAAG GAAGCCCAGC AGGCGGCAGC GGCCGCACAA CTGCGCCAGG GCAGCTACCG GGCCAGCCCG GCGCGCACCT GGTAA
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Protein sequence | MKPKFLAAKL ALVIAVSSTL AVTPVQAGIP VIDGTNLSQN IMTAIESVAQ TLKQIEQYST QLQQYQNQLQ NTMAPAAYIW DQAQSTINGL MNAVNTLDYY KTQLGSLDSY IGKFQDVNYY KNSPCFTAAG CSDAERAALR NVAQLASESQ KKANDALFKG LDRQQTNLTA DAATLQRLQS AAQGAQGQMQ AIGYANQLAS QQANQLLQIR GLLIAQQNAM ATKMQADADK EAQQAAAAAQ LRQGSYRASP ARTW
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