| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6617 |
|---|
| Symbol | |
|---|
| ID | 4308496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008385 |
|---|
| Strand | + |
|---|
| Start bp | 27075 |
|---|
| End bp | 28976 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638147756 |
|---|
| Product | transposase Tn3 family protein |
|---|
| Protein accession | YP_771694 |
|---|
| Protein GI | 115345509 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGTT GGCACACAAC GTTTTTGGGG ATGCGTGGGC TCCCCCGCGA TATCAGCGAC
TTCGAGATGA AGGCATTTTT CACCTTCGAT GGTGCCGAGC GCGACGCAAT CAATGCACGC
CGAGGTGATT CCCACAAGCT TGGTCTGGCG CTCCATATTG GTTTCCTGCG CATGAGTGGG
CGTTTGCTCG GTGCCTTTCG GGTAATTCCA GTAGCCTTGT GGCGCCACCT TGGCAACGAG
CTTGGCATTG CAGCACCAGA AGTCGCCTCG CTGAGAGCCA TGTATGAACG CGGGCGCACG
CTATTCGATC ACCAACAAGT AGCCTGCACG GTCCTTGGAT TCCAGTGGAT GAGCGAGCAC
CAGCGCCGCT CACTGGTACG TGAACTGCGC GACGAAGTGG CGCGCTGCGC CGACCGCGAT
CAGCTACTCG TGCGGGCGCG TCAATGGCTG TACAAGAACA AGCTGGTGAT CGTGCACGAG
CGGGCAATTC GGACACTGAT TGCGGCGGCA CTTGCCCAGC TTGAAGTTGA AACAGGCACC
GCCATCGCCG CCAGCGTTGA TCCAGCAACA CTTGATCGCT GGCGAGCCTC AGTTTCAGAG
CTGCGCCCAG ATGGACAAAC CCAGCAGAGT TGGCTATGGG CTGCACCGGC GAAACACTCA
ACCCGCCAAA TCAGCGAGGT ACTGGAGCGC ATCGACCTGC TTTACACGCT GGACGTTCAT
AAGCACCTGG CAGACATCCC CGATCTCATC TTGCGCCGCT ACGCGCGCCG ACTTGTCTCC
AGGCCGCCCT CAGCCGGAGC CAAGATCAAA GAGCCAGCGC GCACCGTGGA GGTCGCATGC
TTTCTTCGGT ATTGCCTGTT CACCACCACA GACCAGTTGA TCCTTATGGT GCAGCGCCGG
ATCGCCGATC TGTGGCGTCA GGCTGCCGCC GATGTCCCCG CTACCGTCAA TTGGGCCGCA
ATGTACAAAA CGCTGCTCGG CGAACTTGTT GCCTTGAGCG CGCAAGGTGC GGTGCCAGAT
GCTGAGTTGC GTGCCCGTCT TGAAGCCTTG ATCACCGAAA CCCAGAAACG CAAACCACCG
AGCAGGGCCT CCCTGGTCCG CGAGGGATTG ATTGATGGAA TTCGCCCCGT GCGGTCGTTG
CTCGTCGCCA TTGCAAAGCT GCCCTGGCAG GCCACCGGCG AGCATCCTGC CATCGAGTAC
CTTGCCAAGC TGCAAGCTTT ATATCTCAAA GGATCCAGAA AGCTGCCAGT TGAAGTGGTG
GCACCAAGTC TGGGAATGAT CTGGCAGGTT TCGATCTCCA GCCCAGACCG GGAACGGGCG
TTTCAGGCGT TGGAGGTGGC CACCCTGTTT GCCCTGCGCC GCGCGGTGCG CAATGGCTCG
GTCTGGATTG AGCACAGCCT GAGCTTTCGG GGTCGTGCGC GCTTGTTCTT CACGGACGAG
CGTTGGCAGG CAGAGTCCAA GAAACACTAT GCCCGTCTAT CGTTACCCAG CAAGGCTGCC
ACTTTCTTGA AGCCTTTGCT GGCCAGAGTA ACTGCCGGTG TCGATGCGGT GGCCGCTGCA
GCCCGCAGTG GCGTACTGCG CGTGGATGAT GAACTCCATT TGTCGCCATT GCCCGCAGAG
GACGAAGACC CAGAAGTGAC CAAGCTGCGC GCGGCTTTGG ATCACCGCAT CGGTGAGGTT
CAATTGCCGG AAGTGATTCT GGCCGTTGAC GCCCAGGTGC GCTTTAGCTG GATCATGCTC
GGACGTGAGC CGCGCTCTAC CGACGAGCTG CTGATGGTCT ATGCCGGCAT CATGGCCCAC
GGCACCAGTC TGACTGCGGT CGAATGCGCG CGCATGATTC CGCAGCAGAA GGCGGCGCGG
CAGTGCTGCC TCAACTTCGG GTGTCACGTC TGTGCTCCTT GA
|
|---|
| Protein sequence | MQGWHTTFLG MRGLPRDISD FEMKAFFTFD GAERDAINAR RGDSHKLGLA LHIGFLRMSG
RLLGAFRVIP VALWRHLGNE LGIAAPEVAS LRAMYERGRT LFDHQQVACT VLGFQWMSEH
QRRSLVRELR DEVARCADRD QLLVRARQWL YKNKLVIVHE RAIRTLIAAA LAQLEVETGT
AIAASVDPAT LDRWRASVSE LRPDGQTQQS WLWAAPAKHS TRQISEVLER IDLLYTLDVH
KHLADIPDLI LRRYARRLVS RPPSAGAKIK EPARTVEVAC FLRYCLFTTT DQLILMVQRR
IADLWRQAAA DVPATVNWAA MYKTLLGELV ALSAQGAVPD AELRARLEAL ITETQKRKPP
SRASLVREGL IDGIRPVRSL LVAIAKLPWQ ATGEHPAIEY LAKLQALYLK GSRKLPVEVV
APSLGMIWQV SISSPDRERA FQALEVATLF ALRRAVRNGS VWIEHSLSFR GRARLFFTDE
RWQAESKKHY ARLSLPSKAA TFLKPLLARV TAGVDAVAAA ARSGVLRVDD ELHLSPLPAE
DEDPEVTKLR AALDHRIGEV QLPEVILAVD AQVRFSWIML GREPRSTDEL LMVYAGIMAH
GTSLTAVECA RMIPQQKAAR QCCLNFGCHV CAP
|
|---|
| |