| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6452 |
|---|
| Symbol | |
|---|
| ID | 4315356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | + |
|---|
| Start bp | 1081345 |
|---|
| End bp | 1082172 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638154296 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_778330 |
|---|
| Protein GI | 115361193 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0358562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT ATGATGTTCG CAACCGAGTC GTCGCCATAA CAGGCTCTAC CGGAGGGCTG
GGGGGCGGCC TTGCTCGTGT GCTGGTCGAC AAAGGCGCGC GAGTCGCACT CCTTGATATT
GACCGCCGTG CGCTGCATGC GCAACAAGAG GCACTTGGGC AATCGGCCTT CGCGTTTGAA
ACCGATGTCC GTTCGATGAG CAGCGTCAAT GACGCGATGA ACGCGGCTGC GGAGCATTTT
GGCGGCATTG ACATCGTGAT CGCGAATGCC GGAATCGATT GCGTCGAGCC TTTGATCTCG
GCAGATCCCA AAAATTTCGA GCGTGTCATC GATATCAACT TGACCGGCGT CTGGCGGACG
TTCCGTTCGA GTATTCCATA CGTGGCGCAA CGACAAGGCT ATCTTATGGC GGTTTCTTCC
ATGGCTGCCT TCGTTCATTC ACCGTTGCAA GCCCACTACA CGGCAAGCAA GGCTGCGGTA
TGGGCGATGT GTAACAGCAT TCGACTCGAG GTCCGACACA TGGGGGTGGA CGTCGGAAGC
GTGCATCCCA CATTCTTCCA AACTCCCATG ATGGAACAAG TTCATTCCGA CAAGGCGGGA
TTGAAATTGT GGGGAGGAAA TCGGGGTGGA ATTTGGAAGA TGATTTCGAT CGAAAGCGTG
GTGGATGGCA TTGTCAACGG AATCGAGAAC CGTAGAGACA TGGTCGTGCT GCCGAAACAA
AACGCATTGA TTGCCAAAGC CCCGGGGTTG TTCCGTCCGC TGATCGAAGC TATTGGCTTC
AAAGGGAAGG ATGTCAGGGA AGCAATCGAG ATTTCGACGC GACGTTGA
|
|---|
| Protein sequence | MKKYDVRNRV VAITGSTGGL GGGLARVLVD KGARVALLDI DRRALHAQQE ALGQSAFAFE
TDVRSMSSVN DAMNAAAEHF GGIDIVIANA GIDCVEPLIS ADPKNFERVI DINLTGVWRT
FRSSIPYVAQ RQGYLMAVSS MAAFVHSPLQ AHYTASKAAV WAMCNSIRLE VRHMGVDVGS
VHPTFFQTPM MEQVHSDKAG LKLWGGNRGG IWKMISIESV VDGIVNGIEN RRDMVVLPKQ
NALIAKAPGL FRPLIEAIGF KGKDVREAIE ISTRR
|
|---|
| |