| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_6392 |
|---|
| Symbol | groEL |
|---|
| ID | 4315296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008392 |
|---|
| Strand | - |
|---|
| Start bp | 1020892 |
|---|
| End bp | 1022514 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638154236 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_778270 |
|---|
| Protein GI | 115361133 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0385642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAA AAGACGTCAA ATTCCATGAC AGCGCCCGCG CCCGCATCGT CAAGGGCGTG
AACGTGCTCG CCGATGCCGT GAAGGTGACG CTCGGGCCGA AAGGCCGCAA CGTGGTGATC
GAGCGCAGCT TCGGCGCGCC CACGATCACG AAGGACGGCG TGTCGGTCGC GAAGGAAATC
GAGCTGAAGG ACCGCTTCGA AAACATGGGC GCGCAGATCG TCAAGCAGGT CGCCTCGAAG
ACGGCCGATG TGGCCGGCGA CGGCACGACC ACGGCCACCG TGCTCGCGCA GGCGATCGTG
CAGGAAGGCA TGAAGCACGT GGCCGCCGGC ATGAATCCGA TGGACCTCAA GCGCGGCATC
GACAAGGCCG TGGCCGCCGT GCTCGACGAG CTGCGCAAAC TGTCGAAGCC GATTTCCACG
AACCGCGAGA TCGCGCAGGT GGGTTCGATC TCGGCGAACG CCGACGAGGC GATCGGCAAG
ATCATCGCCG ACGCGATGGA GAAGGTCGGC AAGGAAGGCG TCATCACGGT CGAGGACGGC
AAGTCGCTCG AGAACGAGCT GGACGTGGTC GAAGGGATGC AGTTCGACCG CGGCTACGTC
AGCCCCTACT TCATCAACGA TCCGGAAAAG CAGGCCGCGT ATCTGGACGA CGCGCTGATC
CTGTTGCACG ACAAAAAGAT CTCGAACATC CGGGATCTGC TGCCGGTTCT CGAGGCGACC
TCGAAGGCAG GCAAGCCGCT GCTGATCGTC GCGGAAGACA TCGACGGCGA AGCGCTGGCC
ACGCTCGTGG TCAACGCGAT GCGGGGCATC CTGAAGGTCG CGGCCGTCAA GGCGCCCGGT
TTCGGCGACC GGCGCAAGGC CATGCTGGAG GACATCGCGA TCCTCACCGG CGCGACCGTC
ATCTCGGAAG AAACCGGCAA GCAACTGCAG AAGGCGTCGC TCGAAGATCT CGGCAGTGCG
AAACGCGTCG AGGTCCGCAA GGAAGACACG ATCATCATCG ACGGCGCGGG CGACCAGGAG
CGCATCGAGG CGCGCGTGAA GTCGATCCGT ACGCAGATCG ACGAAACCAC GAGCGACTAC
GATCGCGAGA AGCTGCAGGA ACGCGTGGCG AAGCTCGCCG GCGGTGTGGC CGTCATCAAG
GTGGGTGCTG CCACCGAAGT CGAGATGAAG GAGAAAAAGG ACCGCGTCGA CGATGCGCTG
CACGCCACAC GCGCGGCGGT CGAGGAAGGC ATCGTGCCGG GCGGTGGCGT GGCGCTCCTG
CGCGCGCGTT CGACGGCGAC GAGCCTGAAA GGCGCCAACA GCGATCAGGA CGCCGGCATC
CAGATCGTGC TGCGCGCGCT CGAGGCACCG CTGCGCGTGA TCGCGTCGAA TGCCGGGGAC
GAGCCTTCGG TCGTCATCGC GAAGGTGCTC GAAGGCAAGG GCAACTTCGG CTACAACGCG
GCCACCGGCG AGTATGGCGA TCTGGTCGAG GCCGGCGTGG TCGATCCGAC CAAGGTCACG
CGTACGGCAC TGCAGAACGC CGCATCGATT GCCGGGCTGA TTCTGACGAC GGATGCAACG
GTTGCCGATG CACCGAAGGA CGAAAAGCCT GCGCAGGCGC CCGCGCCGGA GCTCGAGTAC
TGA
|
|---|
| Protein sequence | MSAKDVKFHD SARARIVKGV NVLADAVKVT LGPKGRNVVI ERSFGAPTIT KDGVSVAKEI
ELKDRFENMG AQIVKQVASK TADVAGDGTT TATVLAQAIV QEGMKHVAAG MNPMDLKRGI
DKAVAAVLDE LRKLSKPIST NREIAQVGSI SANADEAIGK IIADAMEKVG KEGVITVEDG
KSLENELDVV EGMQFDRGYV SPYFINDPEK QAAYLDDALI LLHDKKISNI RDLLPVLEAT
SKAGKPLLIV AEDIDGEALA TLVVNAMRGI LKVAAVKAPG FGDRRKAMLE DIAILTGATV
ISEETGKQLQ KASLEDLGSA KRVEVRKEDT IIIDGAGDQE RIEARVKSIR TQIDETTSDY
DREKLQERVA KLAGGVAVIK VGAATEVEMK EKKDRVDDAL HATRAAVEEG IVPGGGVALL
RARSTATSLK GANSDQDAGI QIVLRALEAP LRVIASNAGD EPSVVIAKVL EGKGNFGYNA
ATGEYGDLVE AGVVDPTKVT RTALQNAASI AGLILTTDAT VADAPKDEKP AQAPAPELEY
|
|---|
| |