Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5877 |
Symbol | |
ID | 4314783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | - |
Start bp | 353724 |
End bp | 355244 |
Gene Length | 1521 bp |
Protein Length | 506 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638153718 |
Product | type II secretion system protein E |
Protein accession | YP_777757 |
Protein GI | 115360620 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCGCGCC CGCTTTCCGA CAGCGGCGAG TTCGCCGCGA GCGAGGAGGA GCGCAAGTTT CTCTGTCTGC TCGACGACGG CACGCTGCTC GTTGCCGAAG GGCACGAAAT GAATCCGTTC GTGCTGTCGT ATTGCGCGAG GCTCGAACGG CTCAATTGCC ACTACACGAC GCGGCTCGTG ACACTCGATG CGATCAGACG CAGCTATCAG GGCCCGCGTC GCGACGGCAG TGCCGAGCGC ATCGATCACA CGCGGATGCA GGTCCTCGCG AAGAACCTGA TCGCGCGGGC GTGCGACGAG CGTGCGTCGG ATATCCATAT CCGTGTGAAC CGCTTCAGCA CGGAGATTCT TTTTCGCATC CACAACGAAC TCGTGCGCAT TTCGGAGCAG ACGCGCGAGT ACGGCGAGCG GCTGCTCGCC ACGCTGTATG CGGCGATGTC GAGCGTATCG GACAACACCT ACAAGCCGAA CGAACGCCAG GACGCGGCCA TCGGCGATCG CGACAAGCTG CCGGACCGGC TGTTCGGCGT GCGGATCGCG ACGGCGCCCA CGAGCGTCGG CAGCGTCATG GTGCTGCGGC TGCTCTACAA CGATGCGGGC GAGGCGACGG CCCTGACCGA GCTCGGCTTC ACGGTGGCGC AGGCGAACGC GTTCGAGCTG CTCGCGCAGC AGCCGCACGG CATGAACATC ATCAGCGGCC CGACCGGCTC GGGCAAATCC ACGACGTTGC AGCGCGTGCT GACGAAGCAA CTGCGCGAGA TGGCCGGCTC GATCCACGTC ATCACCGTGG AAGACCCGGT GGAGTACCCG ATCGAGGGCG CCGTGCAGAC GCCCGTCGTC AACGCGCCGA CGGAAGAGGC GCGCTCGCTC GCGTTCGCCG CCGCGATCGC GAATGCGATG CGGCTCGATC CCGATACGAT CATGATCGGC GAGGTGCGCG ACCGCGCATC GGCGCAAAGC GCGTTGCGCG CCGCGATGAC GGGCCATCAG GTCTGGACGA CGGTGCATGC GAACGGCGCG CTCGCGATCG TGGACCGTCT CGTCGATCTC GGCTTGCCGA TCGCGATGGT GACGGACGAA TCGCTCGTCA CGGGGCTCAT CAGCCAGCGG CTCGCCAAGC TGCTGTGTCC GCACTGCTCG CGCCCGCTGG CCGAGGCGAT GGCGCAGCTC GACATGGGGC TCGTCGCGCG CGTGAAGCGG GCCGTCGGCG CGCGGTTCGA CGCGGTGCGC GTGGCCGGGC CCGGTTGCCC GCATTGCAAG AACGGCACGG TCGGCCGGAC GGTTGTGGCC GAGGTCGTGC GTACCGACGC GACGTTTTGC GAATTGCTGC GCGCCGGGCG CAAGCCCGAT GCACAGGCGT ACTGGCTCAG CGAGCTCGCG GGGCAGACGG TCGCGCAGCA CGCGCTCGAA AAAGTGGCGG CGGGCCTCAT CGATCCGCGC ATGGCGGAGC GCGTGGTCGG CCCGTTCATG CAAGGCAGCG GGGGGCGGCC GCAGCCGCTC GGAAGCGGCT ATGGCACTTG A
|
Protein sequence | MARPLSDSGE FAASEEERKF LCLLDDGTLL VAEGHEMNPF VLSYCARLER LNCHYTTRLV TLDAIRRSYQ GPRRDGSAER IDHTRMQVLA KNLIARACDE RASDIHIRVN RFSTEILFRI HNELVRISEQ TREYGERLLA TLYAAMSSVS DNTYKPNERQ DAAIGDRDKL PDRLFGVRIA TAPTSVGSVM VLRLLYNDAG EATALTELGF TVAQANAFEL LAQQPHGMNI ISGPTGSGKS TTLQRVLTKQ LREMAGSIHV ITVEDPVEYP IEGAVQTPVV NAPTEEARSL AFAAAIANAM RLDPDTIMIG EVRDRASAQS ALRAAMTGHQ VWTTVHANGA LAIVDRLVDL GLPIAMVTDE SLVTGLISQR LAKLLCPHCS RPLAEAMAQL DMGLVARVKR AVGARFDAVR VAGPGCPHCK NGTVGRTVVA EVVRTDATFC ELLRAGRKPD AQAYWLSELA GQTVAQHALE KVAAGLIDPR MAERVVGPFM QGSGGRPQPL GSGYGT
|
| |