Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_5872 |
Symbol | |
ID | 4314778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008392 |
Strand | + |
Start bp | 348560 |
End bp | 349660 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638153713 |
Product | type II secretion system protein E |
Protein accession | YP_777752 |
Protein GI | 115360615 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGTTC CGAGTCACGA ACGTCGCGAC CTGACGCGCG AGATTCTCGA ATTGATCGAC CTGCGGCAGA CTTTCACCGA CATCCATATC GAGCAGGACC GGCCGATCAT GATCAAGGCG CCGCGCGGCT GGCTCGCCGT CGGCGAGGAG CCCGTGCTCC ACGACGAAAT GCTGCCCACG CTGGCCTCGA TCGAACCGGA CTGGGAGGCG CTGCTTCAGC ACGGCGCGAT CGATCGCCCG TTCGTGCTCA CGCGCTGCCG CCTTCGCTGC AACATCTACC GCACCAATGG CGGCCGCAAG CTCGTCATCT CGATCCGGCG CCTGCCGCTG CAGCCGCTCG CGCTCGACAA GCTCGGCCTG CCCGCCTACG TGCGCTCGAT GATCGACAGC GCCAAGGGGC TGATCCTCGT GACGGGCCCG ACCGGCTCGG GAAAGACGAC GACGATCGCG TCGCTGCTCG AGCACATCAA CCGCACGCGC AACAGCCACA TCGTCACGAT CGAAGAGCCG ATCGAATACG AACTCGAGGG CCGCACGTCG ATCGTCTCGC AGCGGCAAGT GCCCACCGAC ACGCCGAGCT TCTCGGCCGG CCTGCGCGAG GCGCTGCGGC AAAAACCCGA CGTCATCATG GTGGGCGAGG TGCGCGACCC CGAGACGGCG GAGACGGCGC TGCAGGCCGG CGAATCGGGC CACCTCGTGC TCGCGACGAT GCACACGGGC AGCGCGATCG GCACGCTCAC GCGGCTGCTG TCGTTTTTTC CGGCCGAGCA GCGCGAGCGC TATGCGGCCG CGCTCGCGAA CTGCCTCATC GGCGTGATCT GCCAATGCCT CGTGCCGACG GAGGATGGCG AGAACTTCGT GCTCGCGAGC GAACTGCTCT TCAACAACAA TCAGCAGATC AGCGGCCTGC TGACCGATCC GGGCAAGCTG CCGTACCTTG CCGAGTTCAT GAAGCGCAAG GAAGACAACA TGTCGCGCAT GCTCAACGAT CACCTCTTCA GCCTCGTATC GAAGCAGCAA TGCCTGCCGC GCGACGTGCT GCGCGCGACC TACAACCGGC TCGAACTGCA CGAAATGCTG CAGACGCTCG CGCCGCACTG A
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Protein sequence | MNVPSHERRD LTREILELID LRQTFTDIHI EQDRPIMIKA PRGWLAVGEE PVLHDEMLPT LASIEPDWEA LLQHGAIDRP FVLTRCRLRC NIYRTNGGRK LVISIRRLPL QPLALDKLGL PAYVRSMIDS AKGLILVTGP TGSGKTTTIA SLLEHINRTR NSHIVTIEEP IEYELEGRTS IVSQRQVPTD TPSFSAGLRE ALRQKPDVIM VGEVRDPETA ETALQAGESG HLVLATMHTG SAIGTLTRLL SFFPAEQRER YAAALANCLI GVICQCLVPT EDGENFVLAS ELLFNNNQQI SGLLTDPGKL PYLAEFMKRK EDNMSRMLND HLFSLVSKQQ CLPRDVLRAT YNRLELHEML QTLAPH
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