Gene Bamb_4971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_4971 
Symbol 
ID4313862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008391 
Strand- 
Start bp1988387 
End bp1988998 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content70% 
IMG OID638152814 
ProductXRE family transcriptional regulator 
Protein accessionYP_776854 
Protein GI115359716 
COG category[K] Transcription 
COG ID[COG1476] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.110875 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.347082 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAGTT CCTCCGCGTC GCGGCGCACG CCTGCCGCCG CCGCACCGCA ACCGTCGGGC 
GTGACGCCGC CGCGGGTCGG CGAGCAAATC CAGCGCCTGC GCAACGAGCG CAAGCTGACG 
CTCGACGACC TGTCGCGCGC GGCCGGCGTA TCGAAGTCGA TGCTCTCCGA GATCGAGCGC 
GACAAGGCCA ATCCGACGAT CGCGGTTGCG TGGCGGCTCA CCAATGCGCT CGGCATCACG 
CTCGACGAAC TGTTCTCGCA ACCGAAGGCG GCGGAGACGA TCCGCGTGGA CGGCCCGCAC 
GACATTCCGA CGCTCGCCGG TCACGACGGC CGCTATCAGT TGCGCGTGTG GGGCCCGATC 
GACCTGGCCG GCAAATTCGA GTGGTACGAA CTGACGCTGC CGGGCGGCGG CGCGCTCGTA 
TCGAACGCGC ACGAACCCGG CACGCGCGAG CACCTCACCG TGCTGCACGG CGCGATGGAA 
ATCGATGCCG CGGCCGCGAG CCGGCGCCTG AAGGCGGGCG ACACCGCCCG CTACGCGGCC 
GACACGCCGC ATGCGATCCG CAACCCCGGC AAGGCCGAAG CGCGCGCATT ACTGATCGTG 
ATCCATCGCT GA
 
Protein sequence
MASSSASRRT PAAAAPQPSG VTPPRVGEQI QRLRNERKLT LDDLSRAAGV SKSMLSEIER 
DKANPTIAVA WRLTNALGIT LDELFSQPKA AETIRVDGPH DIPTLAGHDG RYQLRVWGPI 
DLAGKFEWYE LTLPGGGALV SNAHEPGTRE HLTVLHGAME IDAAAASRRL KAGDTARYAA 
DTPHAIRNPG KAEARALLIV IHR