Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3981 |
Symbol | |
ID | 4312877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 888847 |
End bp | 891084 |
Gene Length | 2238 bp |
Protein Length | 745 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 638151823 |
Product | penicillin-binding protein 1C |
Protein accession | YP_775869 |
Protein GI | 115358731 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.187688 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGATC TGGTTTTGCC GCGGCCGGCG CGTTTCGCCG GCCGCGTATT CGTCGCCGTC GTGCTGGCCG CGCCGCTCGT CGCGCACGCG CTGCCCGGCT ACGACGACGT GCGGCGCGGC TGGCGCAGTT CCGACTGGGT GCTGCTCGCG CGCGACGGCA CGCCGTTGCA GCGCACGCGC GTCGATCTCA CCGAACGGCG CGGCGACTGG GTGTCGCTCG CCGACGTGTC GCCCGCGTTC CGCGAGGCGA TCGTCGTGTC GGAAGACAAA CGTTTCTACG AACACAGCGG CGTCGACTGG CGCGGCATCG CCGGTGCGGC GTGGGGCAAC CTGTGGAACG AGCGCACGCG CGGCGCGTCG ACCGTGACGA TGCAGCTCGC CGGGCTGCTC AGCGATTCGC CGCGCCGCTC GGGCCAGCGC TCGCTGCCGC AGAAGGCCAC CCAGGCGATG AACGCGCTGC TGCTCGAGCG CGGCTGGCGC AAGGACCAGA TCCTCGAGGC CTATCTGAAT CTCGTGCCGT TTCGCGGCGA GACGGTCGGG CTCGCCGCGC TGTCGCAGGT GCTGTTCGGC AAGGCGCCGT CCGGTCTCGA CGCACGCGAA GCCGCGATCG CCGCGGCGCT GGTGCGCGCG CCGAACGCGT CGCCCGCGAA GGTCGCCGAG CGGGCCTGCC GGATCCTGCG CGACATGCAT GCGGAACAGG GCTGCGCGTC GCTCGACGGC TACGTGCAGC TCGTGATCGC ACGCCCGGCC AATGCCGTGC GGGACGACAG CGCCGCCCTC GCCCCGCACT TCGCGCGCCG CATCGCGGCC GAGGTCCGAC CCGCGGCCGG CGCGCAGGTG CGCACGACGC TCGACGCGCC GCTGCAGCGC TTCGCGCGCG ACACGCTGAC GCGCGCACTG ACCGAGCTCA ACGCGCCCGC GCACCGGCGC AACGTGCAGG ACGGCGCGGT CGTCGTGATC GACAACGCGA CCGGCGAGAT TCGCGCGTGG GTCGGTTCGT CGGGGGCGTT GTCGAGCGCA CGCGACGTCG ACGCGGTGCT CGCGCCGCGC CAGGCCGGCT CGACGCTCAA GCCGTTCCTC TACGCGCAGG CGATCGACGA GAAGCGGCTG ACGGCCGCGT CGCTGCTCGA CGACGCGCCG ATCAACCTCG CGGCCGGCGG CGGCCTCTAT ATTCCGCAGA ACTACGACAA GGATTTCAAG GGCTGGGTGA GCGTGCGCAC CGCGCTCGGC GGCTCGCTGA ACGTGCCGGC CGTGCGCACG CTCGTGCTCG TCACGCCGCA CCGCTTCGCG CGCACGCTGA CCGCGCTCGG CCTGCCGCTC GCGCAGGAAG GCGATTACTA CGGCTTCAGC CTTGCGCTCG GCAGCGCGGA CGTCACGCTG CTGTCGCTGA CCAATGCGTA TCGCGCGCTC GCGAACGGTG GCGTCGCGCG CCAGGTCGTC GACCTGCCGG CGCCGGCGCC TGCTTCCGGC GCGTCGACAC CGGGCCATGC GGACAACGGC ACGCGCGTGT TCAGCGAAGC GGCCAGCTTC GTCGTCACCG ACATCCTCTC CGACAACAAC GCACGGGTGC GCACGTTCGG CTTCGACAAC CCGCTCGCGA CGCGCTTCTT CTCGGCGGTC AAGACCGGCA CGAGCAAGGA CATGCGCGAC AACTGGACCG TCGGCTTCAC GTCGCGGTAT ACGGTCGGCG TGTGGGTCGG CAACGCGGAC GGTTCACCGA TGTGGGACGT GTCGGGGGTG ACGGGCGCGT CGCCGGTGTG GTCGGCCGTC GTCAGCTACC TGCACCGCGA CCTGCCGAGC CGTGCGCCGA AAGCGCCGGC CGGTGTCGAA ACGCGCCGCA TCGCGTTCGA GCGCGACGTC GAGCCGTCGC GCAACGAGTG GTTCGTCCCG GGCACGGCCC TCGACACGAT CCGGCTCGCC GCACCCGTCA CGCCGGGCAA GGACAGCGCG CGCGCGCCGC TGGCGATCGG CGCGCCGACC GACGGCACGA TCTTCGCGAT CGATCCGGAC ATTCCGCCGA AGAACCAGCG GATCTGGTTC GAGCGGTCGT CCGGGCATGC CGCGCGCTTC GCATGGCGGC TCGACGACAA GGTAATCGGG CACGCCGACC GCATCGCGTG GATGCCGTGG CCGGGCCGGC ACCGGCTGGA ACTCGTCGAC GCGCGCGGCA ACGTCGCGGA TGCGATCGGC TTCGAGGTGC GCGGCGCGTT CGCGAAGCCG GCCGCGCGCA AGCCCTGA
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Protein sequence | MIDLVLPRPA RFAGRVFVAV VLAAPLVAHA LPGYDDVRRG WRSSDWVLLA RDGTPLQRTR VDLTERRGDW VSLADVSPAF REAIVVSEDK RFYEHSGVDW RGIAGAAWGN LWNERTRGAS TVTMQLAGLL SDSPRRSGQR SLPQKATQAM NALLLERGWR KDQILEAYLN LVPFRGETVG LAALSQVLFG KAPSGLDARE AAIAAALVRA PNASPAKVAE RACRILRDMH AEQGCASLDG YVQLVIARPA NAVRDDSAAL APHFARRIAA EVRPAAGAQV RTTLDAPLQR FARDTLTRAL TELNAPAHRR NVQDGAVVVI DNATGEIRAW VGSSGALSSA RDVDAVLAPR QAGSTLKPFL YAQAIDEKRL TAASLLDDAP INLAAGGGLY IPQNYDKDFK GWVSVRTALG GSLNVPAVRT LVLVTPHRFA RTLTALGLPL AQEGDYYGFS LALGSADVTL LSLTNAYRAL ANGGVARQVV DLPAPAPASG ASTPGHADNG TRVFSEAASF VVTDILSDNN ARVRTFGFDN PLATRFFSAV KTGTSKDMRD NWTVGFTSRY TVGVWVGNAD GSPMWDVSGV TGASPVWSAV VSYLHRDLPS RAPKAPAGVE TRRIAFERDV EPSRNEWFVP GTALDTIRLA APVTPGKDSA RAPLAIGAPT DGTIFAIDPD IPPKNQRIWF ERSSGHAARF AWRLDDKVIG HADRIAWMPW PGRHRLELVD ARGNVADAIG FEVRGAFAKP AARKP
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