Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_3854 |
Symbol | |
ID | 4312750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008391 |
Strand | + |
Start bp | 741191 |
End bp | 742741 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 638151696 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_775742 |
Protein GI | 115358604 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.353141 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.927825 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGTCA AGGCGCGCCT CCTGAACGCC GTTCTCGCCA CTCCCCCCAG CGGCAATCAC CGCGTGACGG CCGCACTGCG TCCGTCGATG CTCGGCACGC TGTTCGAGGA CGTTCGCCCG ATGGCGCTGT CCGGCGTCGC CAGCGCGTTC GTCGCGGCGA TCGCGCTGAT CCGTCTGCAG CAACTCTGGT GTTTCGTGTG GCTCGTCGTC GACGTCGGCC TGCTCGCCGC GCGGCTCGCG ATCGCACGCG CGTATGCGGT ACGCCGTGCC GCCGGCGACG ATCGCGCCGA ATACTTCGCG CGGCACTATG CGCCCGTGTC GCTCGCCGCA TGCTTGTTGC TCGGTCTCGG CGTGATGGGC TGCGTGGATG CGTCCGATGC CGAGCTCGGC ACGCTGTCGG TGATGGTCGC CGGCGGCGTG TTCGGCGGGA TCGCGTCGCG CAATTCGGCG CTGCCGCGGC TCGCGATGAC GCAGGTCACG CTCGGCGTGC TGCCGATCGG CGTCGGCGCG CTGCTGGCCC GCCGGCCCGA CGCGTGGCTG CTGGTGCCGC CGCTCGTGAT CTATCTCGCG GCGATGCGCA CGGTCGTGCA GCGCCATTAC CGCGTGCTGG TCGCGTTGAT CGCCGCGCGC CAGCGCAACG CCGAGCTCGT CGCGCGCTTC GATGCCGCAC TCACCTACAT GCCGCACGGC CTCTGCATGA TCGACGGCGA GAGCCGCGTG ATCGTCGCGA ACCGGCGCAC CGCGCAGCTG TTCGGCTCGC CGCGCGAGAT CATGCTGGAC ACCCCGCTGC CCGACGTGAT CGCGGCGCTC GGCGCGAACG CGGTGACCGA TTCCGGCGAT GCGGGCCTCG CCGCGCAATG CTCGGTATGG TTGAACCGCG ACGAACCCGT GCCGCTCGAC ATCGCGCTCG CCGACGGTCG CCAGCTCGAA CTGACGCGCC ATCGCGTCCC GGACGGCAAC GCGGTGGTCA TCGTCGAGGA CGTCACCACG CGCCGGCGCG CCGAGCAGCA CATTCGGCAC CTCGCGCGGC ACGACGCGCT GACCGGCTTG CCCAACCGCC ACGAACTGCA CGCGGAGCTC AGGCGCAGGC TCGCGCACCG GCCGCGCATG CCGAGCCCCG CGCTCGCCGT CATGTATCTC GACCTCGACG GCTTCAAGGC GATCAACGAC CGGTTCGGCC ACCAGGCTGG CGACGAGGTG CTCACGCAAG TTGCCGAGCG GCTCGGCAAG ACGCTGCCGC CCGGCGAGCT GGCGGCTCGC ATCGGCGGCG ACGAGTTCGT CGTCGCGATC GACGACACGA CGATGCAGGC GTGCTCGATC CTCGCCGCGC GCATCATCCG GCAGATTTCG GCTCCGTACA CGCTGTCGAT CGGCGCGACC GTCAGCCTCG GGATCAGCAT CGGCATCGCG CTCGACGACG GACACGGCTC GCCCGACGAA CTGATCCGGC AGGCCGACAG CGCGCTATAC GACGCGAAGT CGGGCGGCAA GGGGATCTAC CGCTTCTATT CGGCGGGAAG CCGCCGCGTG GCGCCCGCGA CCGCGAACTG A
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Protein sequence | MAVKARLLNA VLATPPSGNH RVTAALRPSM LGTLFEDVRP MALSGVASAF VAAIALIRLQ QLWCFVWLVV DVGLLAARLA IARAYAVRRA AGDDRAEYFA RHYAPVSLAA CLLLGLGVMG CVDASDAELG TLSVMVAGGV FGGIASRNSA LPRLAMTQVT LGVLPIGVGA LLARRPDAWL LVPPLVIYLA AMRTVVQRHY RVLVALIAAR QRNAELVARF DAALTYMPHG LCMIDGESRV IVANRRTAQL FGSPREIMLD TPLPDVIAAL GANAVTDSGD AGLAAQCSVW LNRDEPVPLD IALADGRQLE LTRHRVPDGN AVVIVEDVTT RRRAEQHIRH LARHDALTGL PNRHELHAEL RRRLAHRPRM PSPALAVMYL DLDGFKAIND RFGHQAGDEV LTQVAERLGK TLPPGELAAR IGGDEFVVAI DDTTMQACSI LAARIIRQIS APYTLSIGAT VSLGISIGIA LDDGHGSPDE LIRQADSALY DAKSGGKGIY RFYSAGSRRV APATAN
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