| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_2224 |
|---|
| Symbol | |
|---|
| ID | 4311447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 2451914 |
|---|
| End bp | 2452597 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638150051 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_774114 |
|---|
| Protein GI | 115352275 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CCGCCCCCGA GTCTGCTATC TTCCCCCGCA TCTCATCGCT TCCCCACCTC
TCCATGACTG ACCGTATCGT CGCCGCGTTC GATTTCGACG GCACCATCAC GACCACCGAC
AGCTTCCGCC ATTTCGTCCG CTACGCGGTC GGCACGCCGC GCTTCGCGTG GGCCGGGCTG
CGCGCGCTGC CGTGGATCGC CGCGATGAAA GCCGGGCTGC TGTCGCGCGG CGATGCGAAG
GCGAAGTTCG CGTGGTTTGC ATTCGGCCCG ATGGGCGACG ACGCGCTCGA TGCGCTCGCG
CGCCGGTTCG TCGACGGCTA TCTGCCGAAC CTCGTGCGTC CGGACATGCT GGAACGGGTG
CGCGAGCATC GCGCGCGCGG GCACGAAGTC GTGCTGGTCA GCGCGTCGCC GTCGCTGTAT
CTGGAGAAGT GGGCGAAGAC GGCGGGCATC GACACGGTGC TCGCGACGCA CCTCGCGTTC
GAGCGCGGCA GGTTCACCGG GCGGCTGAAC GGCGAGAACT GCTGGGGCCC GCAGAAAGTC
GTGCGGTTGC GCGGCTGGTG GGGAAATCGG ACGCCCGCGA AACTGTTCGC CTACGGCGAC
AGCCGCGGCG ACAAGGAAAT GGCCGAACTC GCGAACTGGG CATGGATCCG CGGGCACGGA
CCGATGCCGC CGATCGGCGA TTGA
|
|---|
| Protein sequence | MTAPAPESAI FPRISSLPHL SMTDRIVAAF DFDGTITTTD SFRHFVRYAV GTPRFAWAGL
RALPWIAAMK AGLLSRGDAK AKFAWFAFGP MGDDALDALA RRFVDGYLPN LVRPDMLERV
REHRARGHEV VLVSASPSLY LEKWAKTAGI DTVLATHLAF ERGRFTGRLN GENCWGPQKV
VRLRGWWGNR TPAKLFAYGD SRGDKEMAEL ANWAWIRGHG PMPPIGD
|
|---|
| |