| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_1935 |
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| Symbol | |
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| ID | 4310173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 2132477 |
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| End bp | 2134996 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638149752 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_773825 |
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| Protein GI | 115351986 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000247834 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAATTA TCAAACGACC GTCTTCTTCT TCCGACCGGA ACGAACCTCA CTACACATTG
CGCCGTTCGC CGTCGGGAGC CTACTACCCC GATGACGACA ACGGCGACGA CGATCGCCGT
ACGCAGCGCC GTGGAGGCGG GGGCGGCGGT GGCCGCTCGT TCGGCTCGCG CGTCGCGCTG
TGGTTCGTCG GACTGTTCGC GACGCTCGCG GTCGTCGGCG CGCTGATCGT CGGCTACGCA
CTCGTCGTGA TGGCACCGCA ACTGCCGTCG CTCGATGCGC TGACCAACTA TCAGCCGAAG
GTGCCGTTGC GCGTGTTCAC CGCCGATCAC GTGCTGATCG GCGAGTTCGG CGAGGAGCGC
CGCAGCCTCG TGCGCTTCCA GGACATTCCC GACGTGATGA AGAAGGCCGT GCTCGCGATC
GAGGACTACC GCTTCTACGA ACACGGCGGC GTCGACTTCC TCGGCATCCT GCGCGCGGGC
GTGGCCGATC TGATGCACGG CGGCGCGCGC CAGGGCGCGA GCACGATCAC GATGCAGGTC
GCGCGCAACT TCTTCCTGTC GAGTGAAAAG ACCTACACGC GCAAGATCTA CGAGATGCTG
CTCGCATACA AGATCGAGAA GGCGCTGACG AAGGACCAGA TTCTCGAGCT GTACATGAAC
CAGATCTACC TGGGCCAGCG CTCGTACGGC TTCGCGGCCG CCGCGCGCGT GTATTTCGGC
AAGGACCTGA AGGACATCAC GCTCGCCGAA GCGGCGATGC TCGCGGGGCT GCCGAAGGCG
CCGTCCGCGT ACAACCCGGT CGTCAATCCG AAGCGCGCGA AGGTGCGTCA GGAATACATC
CTGAAGCGCA TGCTCGAGAT CGGCTACATC ACGCAGCCGC AGTACGACCA GGCGGTGAAG
GAGGAGATCC GCGTGCGCAC GCCGGGCAAT CAGTATGCGG TGCACGGCGA ATACGTGTCC
GAGATGGTGC GGCAGATGAT GTACCAGCAG TACAAGGACG AAACCTATAC GCGCGGGCTC
ACCGTCACGA CGACGATCAA CTCGGCCGAC CAGGAAGCGG CGTACCAGGC CGTGCGCCGC
GGCATTCTCG ATTACGAGCG CCGCCACGGC TATCGCGGGC CGGAAGGCTC GATCAACCTG
CCGGCGGCCG GCGACGAGCG CGACGAGGCG ATTGACGATG CGCTCGCCGA TCATCCGGAC
AATGGCGATC TGCAATCGGC GGTGGTGCTG GCGGCGTCGC CGAATGCGGT CGAGGTGCAG
TTCGTCGGCG GCGCGACGAC GACGATCGGC CCGGCCGGGC TGCGCTTCGT GTCGGGCGCG
CTGACTCAGC GCGCGAATGC CACGTTGAAG ATCAAGCCCG GTTCGATCGT GCGCGTGCTG
AAGGATGGCA AGACGGGCTG GCAGGTCGTG CAGCTGCCGC AGGTCGAAGG CGCGCTCGTC
GCGATCGCGC CGCAGGACGG GGCGATCCGC TCGCTCGTCG GCGGCTTCGA CTTCAACAAG
AGCAAGTTCA ACCACGTGAC GCAGGCGTGG CGCCAGCCGG GTTCGTCGTT CAAGCCGTTC
ATTTATTCGG CGTCGCTCGA CAAGGGCCTC GGACCGGCGA CGATCATCAA CGATGCACCG
CTGTACTTCC CGCCGAGCGT GCCGGGCGGC ACCGCTTGGG AGCCGAAGGA CGACGACCAG
CCGGATGGCC CGATGTCGAT GCGTACCGGC CTGCAGCGTT CGAAGAACCT CGTGTCGATC
CGGATCCTCG CGTCGATCGG CACGCAGTAC GCGCAGCAGT ACGTGACGCA GCGCTTCGGC
TTCGATCCGG CGAAGACGCC GCCGTACCTG CCGATGGCGC TCGGTGCGGG GCTCGTCACG
CCGCTGCAGC TCGCGACCGG CTATGCGGTG TTCGCGAACG GCGGCTACAA GGTCGATCCG
TACCTGATCG CCGAAGTCGA CGATGCGCAC GGGCAGGCGC TGCAGCGGTC GCAGCCGGTG
GTCGCCGGCA GCACGGCGCC GCGCACGATC GAAGGTCGCA ACGCGTACGT GATGAACAGC
CTGCTGCATA CGGTCGCGAC GGCCGGCACG GGCGCGGGCA CCAACGCGCT CGGCCGCGGC
GACCTGCAGG GCAAGACGGG TACGACGAAC GATGCGAAGG ACGGCTGGTT CGCCGGCTAC
CAGCAGTCGC TCGTCGCGGT CGCGTGGATG GGCTTCGATC AGCCGAAGAG CCTCGGCAGC
CGCGAATTCG GCGCGCAGCT CGCGCTGCCG ATCTGGGTGA ACTACATGCG CACCGCGCTG
AACGGCGTGC CCGAGCAGCA GATGCCGATG CCGGACGGCC TGACGACGGT CGACGGCGAG
CTGTACTACG CCGATCGCAC GCCGGGCAAC GGCTTCGTCG GGAGCGTGGA CATCAACCCG
GCCGAGAACG CAATCAGCGC GAACGACGCA CTCGGCTCGG CCGGCGCGGC CGGGCTTGCG
CCGCCGCCCG TCACGCAGCA GGAGAAGCAG CAGATCATGG ACATGTTCGA GAACAAGTAA
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| Protein sequence | MPIIKRPSSS SDRNEPHYTL RRSPSGAYYP DDDNGDDDRR TQRRGGGGGG GRSFGSRVAL
WFVGLFATLA VVGALIVGYA LVVMAPQLPS LDALTNYQPK VPLRVFTADH VLIGEFGEER
RSLVRFQDIP DVMKKAVLAI EDYRFYEHGG VDFLGILRAG VADLMHGGAR QGASTITMQV
ARNFFLSSEK TYTRKIYEML LAYKIEKALT KDQILELYMN QIYLGQRSYG FAAAARVYFG
KDLKDITLAE AAMLAGLPKA PSAYNPVVNP KRAKVRQEYI LKRMLEIGYI TQPQYDQAVK
EEIRVRTPGN QYAVHGEYVS EMVRQMMYQQ YKDETYTRGL TVTTTINSAD QEAAYQAVRR
GILDYERRHG YRGPEGSINL PAAGDERDEA IDDALADHPD NGDLQSAVVL AASPNAVEVQ
FVGGATTTIG PAGLRFVSGA LTQRANATLK IKPGSIVRVL KDGKTGWQVV QLPQVEGALV
AIAPQDGAIR SLVGGFDFNK SKFNHVTQAW RQPGSSFKPF IYSASLDKGL GPATIINDAP
LYFPPSVPGG TAWEPKDDDQ PDGPMSMRTG LQRSKNLVSI RILASIGTQY AQQYVTQRFG
FDPAKTPPYL PMALGAGLVT PLQLATGYAV FANGGYKVDP YLIAEVDDAH GQALQRSQPV
VAGSTAPRTI EGRNAYVMNS LLHTVATAGT GAGTNALGRG DLQGKTGTTN DAKDGWFAGY
QQSLVAVAWM GFDQPKSLGS REFGAQLALP IWVNYMRTAL NGVPEQQMPM PDGLTTVDGE
LYYADRTPGN GFVGSVDINP AENAISANDA LGSAGAAGLA PPPVTQQEKQ QIMDMFENK
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