Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1917 |
Symbol | |
ID | 4310921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 2112370 |
End bp | 2113413 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638149733 |
Product | porin |
Protein accession | YP_773807 |
Protein GI | 115351968 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTCC GCTTCATCCG CACGGCCCCG GCCGCCGCGG CGCTCGCCGC ATGCAGCGTT GCCGCGCATG CGCAGTCGAC CCTCACGCTG TACGGCGCGC TCGACGCCGG CGTGCAGTAC CTGACGCATG CCGACGGACG ACACGCGGCC GTGCAGTTGC AGAACTACGG GATCCTGCCT TCGCAGATCG GGCTGAAGGG CCACGAGGAT CTCGGCGGCG GCTGGCGCGC GCTGTTCAAG CTCGAACAGG GCCTCAACCT CAACGACGGC ACCGCGACCG CCCCCGGCTA TGCGTTCTTC CGCGGCGCGT ACGTGGGTGT CGCGGGCCCG GCCGGCACCG TCACGCTCGG GCGGCAATTC AGCGTGCTGT TCGACAAGAC GCTGCTCTAC GACCCGCTGT GGTACGCGTC GTACAGCGGC CAGGGCGTGA TCGTGCCGAT GACGGCGAAC TTCATCGACC ACTCGATCAA GTATCAGTCG CCCACGTTCG CCGGCTTCGA TGTCGAGGCC CTCGCGGCGA CGGCCGGCGT CGCGGGCAAT ACGCGCGCCG GGCGCGTGCT CGAACTCGGC GGCCAGTACA CGAGCAACGG GTTGTCGGTC AGTGCGGTGC TGCATCAGGC GCACGGCGAC GCATCCGCCG CGGACGATGC TTCCGCGCGC CGCCGCGACC TCGGCACGCT CGCCGCACGG TATGCATTCG CGTCACTGCC GCTCACCGTC TATGCGGGCG TCGAACGCCT GAGCGGCGAT CTCGATGCGG CGCGCACGAT CGTCTGGGGC GGCGCGCGCT ACCTGACCGC GAGCGGAGTC GGACTGAACG CGGGCTTCTA CCACACCGAT TCGCGCACGC CGGCGATCGG CCACCCGACG CTGTTCATCG CGAGCACCAC CTACGCGCTG TCGAAACGCA CCGTCGCCTA CGTGAACCTC GGCTATGCGC GCAATAGCGG CCAGAGCTCG CAGACCGTCT ACGAATACGA CCCGACGCCG CTTGCCGGCG CATCGCAGTT CGGCGCGATG GTCGGCATGT ACCACCTGTT CTGA
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Protein sequence | MTLRFIRTAP AAAALAACSV AAHAQSTLTL YGALDAGVQY LTHADGRHAA VQLQNYGILP SQIGLKGHED LGGGWRALFK LEQGLNLNDG TATAPGYAFF RGAYVGVAGP AGTVTLGRQF SVLFDKTLLY DPLWYASYSG QGVIVPMTAN FIDHSIKYQS PTFAGFDVEA LAATAGVAGN TRAGRVLELG GQYTSNGLSV SAVLHQAHGD ASAADDASAR RRDLGTLAAR YAFASLPLTV YAGVERLSGD LDAARTIVWG GARYLTASGV GLNAGFYHTD SRTPAIGHPT LFIASTTYAL SKRTVAYVNL GYARNSGQSS QTVYEYDPTP LAGASQFGAM VGMYHLF
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