| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0538 |
|---|
| Symbol | |
|---|
| ID | 4309273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | + |
|---|
| Start bp | 603192 |
|---|
| End bp | 605264 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638148332 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_772431 |
|---|
| Protein GI | 115350592 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.242033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGT GCCCCCGTTT CCTCGACTCG TTCTCCGGAC TCGACATGAC GACTTCGTCT
CCCGCCTCTA CCACTCTGAT GGCCAACGCG ATCCGTGCGC TCGCGATGGA CGCCGTCCAG
CAAGCGAACT CCGGCCACCC CGGCATGCCG ATGGGCATGG CCGAAATCGG CGTTGCACTC
TGGTCGCGCC ACCTGAAGCA CAACCCGACG AACCCGCACT GGGCAGACCG CGACCGTTTC
GTGCTGTCGA ACGGCCATGG CTCGATGCTG CTGTACTCGC TGCTGCACCT GACCGGCTAC
GACCTGCCGA TCGAAGAGCT GAAGAACTTC CGCCAACTGC ACTCGAAGAC GCCGGGCCAC
CCGGAATATG GCATCACGCC GGGCGTCGAG ACGACCACCG GCCCGCTCGG CCAGGGTCTC
GCGAACGCGG TCGGCATGGC GCTGGGCGAA GCGTTGATGG CCGACGAGTT CAACCGTGAC
GGCGCGAAGA TCGTCGATCA CCACACGTAC GTGTTCCTCG GCGACGGCTG CCTGATGGAA
GGCATCTCGC ACGAAGCCTG CTCGCTCGCG GGCACGCTGA AGCTGAACAA GCTGATCGCG
CTGTACGACG ACAACGGCAT CTCGATCGAC GGCGACGTCG TCAACTGGTT CCACGACGAC
ACGCCGAAGC GCTTCGAGGC ATACGGCTGG AACGTGATCC CGAACGTGAA CGGCCACGAC
GTCGACGCGG TCGACGCGGC CATCGCGAAG GCGAAGCTGT CGGACAAGCC GACGATGATC
TGCTGCAAGA CGGTGATCGG CAAGGGCGCG GCGACCAAGG CCGGCGGCCA CGACGTGCAC
GGCGCGGCGC TCGGCGCGGA AGAAATCGCG AAGACGCGCG AAGCGCTCGG CTGGAAGTGG
GAGCCGTTCG TGATTCCGCA GGAAGTCTAT GCGGCCTGGG ACGCGAAGGA AGCCGGCAAG
CGTGCCGAGA CCGAATGGGA TGCGACGTTA GCGCAATATC GCGAGAAATT CCCCGCGCAA
GCCGCTGAAT TCGAGCGCCG GATGGCCAAC CAGCTGCCGG CCGACTGGGC CGAGAAGGCC
GCGGCGATCA TCGCCGGCGC GAACGAGCGC GCCGAGACGG TCGCGACCCG CAAGGCTTCG
CAGCAGGCCA TCGAAGGGCT CGCCGCCGCA CTGCCGGAAC TGCTCGGCGG CTCGGCCGAC
CTGACCGGCT CGAACCTGAC CAACTGGAAG GCATCGAAGG CGGTGCGCGC GAATCCGGAA
GGCGCGGGCG TGCTGCTCGG CAACCACATC AACTACGGCG TGCGCGAATT CGGCATGAGC
GCCGCGCTCA ACGGCCTCGC GCTGCACGGC GGCCACAAGC CGTTCGGCGG CACGTTCCTG
ACGTTCTCCG ACTACAGCCG CAACGCGCTG CGCGTCGCGG CGCTGATGAA GGTCCCGACG
ATCTTCGTGT TCACGCACGA TTCGATCGGC CTCGGCGAAG ACGGCCCGAC GCACCAGTCG
ATCGAGCACG TGTCGAGCCT GCGCCTGATC CCGAACCTCG ACGTGTGGCG TCCGGCCGAC
ACGGTCGAGA CGGCCGTCGC ATGGACTCAC GCGGTTGCCG CCGACCGTCC GTCGAGCCTG
ATCTTCAGCC GTCAGAACCT CGCGTTCAAC CCGCGTACCG ATGCGCAGAT CGCGAACATC
GAGAAGGGCG GCTACGTGCT GAAGGACTGG GACGAAGAGA TCGTCGCGCG CAAGATCATC
CTGATCGCGA CGGGCTCGGA AGTCGAGCTC GCGATGAAGG CCGTCGAGCC GCTCGCGCAG
CAGGGCATCG CGGCCCGCGT CGTGTCGATG CCGTCGACCA ACGTGTTCGA TCGCCAGGAC
GCCGAATACC GCGAACGCGT GCTGCCGCAC GGCGTGCGCC GCGTCGCGAT CGAAGCGGGC
GTGACGAGCT TCTGGCACAA GTATGTCGGC CTCGAAGGCG GCGTCGTCGG GATCGACACG
TTCGGCGAAT CGGCACCGGC CGGCGTGCTG TTCAAGTACT TCGGCTTCAC CGTCGAGCAC
GTCGTCGAGA CCGCGAAGGC CGTGCTGGCC TAA
|
|---|
| Protein sequence | MPPCPRFLDS FSGLDMTTSS PASTTLMANA IRALAMDAVQ QANSGHPGMP MGMAEIGVAL
WSRHLKHNPT NPHWADRDRF VLSNGHGSML LYSLLHLTGY DLPIEELKNF RQLHSKTPGH
PEYGITPGVE TTTGPLGQGL ANAVGMALGE ALMADEFNRD GAKIVDHHTY VFLGDGCLME
GISHEACSLA GTLKLNKLIA LYDDNGISID GDVVNWFHDD TPKRFEAYGW NVIPNVNGHD
VDAVDAAIAK AKLSDKPTMI CCKTVIGKGA ATKAGGHDVH GAALGAEEIA KTREALGWKW
EPFVIPQEVY AAWDAKEAGK RAETEWDATL AQYREKFPAQ AAEFERRMAN QLPADWAEKA
AAIIAGANER AETVATRKAS QQAIEGLAAA LPELLGGSAD LTGSNLTNWK ASKAVRANPE
GAGVLLGNHI NYGVREFGMS AALNGLALHG GHKPFGGTFL TFSDYSRNAL RVAALMKVPT
IFVFTHDSIG LGEDGPTHQS IEHVSSLRLI PNLDVWRPAD TVETAVAWTH AVAADRPSSL
IFSRQNLAFN PRTDAQIANI EKGGYVLKDW DEEIVARKII LIATGSEVEL AMKAVEPLAQ
QGIAARVVSM PSTNVFDRQD AEYRERVLPH GVRRVAIEAG VTSFWHKYVG LEGGVVGIDT
FGESAPAGVL FKYFGFTVEH VVETAKAVLA
|
|---|
| |