| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6773 |
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| Symbol | |
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| ID | 6181696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | - |
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| Start bp | 271439 |
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| End bp | 277216 |
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| Gene Length | 5778 bp |
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| Protein Length | 1925 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641685519 |
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| Product | hemolysin-type calcium binding domain-containing protein |
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| Protein accession | YP_001812424 |
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| Protein GI | 172064774 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.395302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTACA CTGTAACCGT AAACACTGTT CCAGCGGGAG CTCCGGAAGT AGGTGGCGCC
ACGTCGTTCG GCGGGCATGC GTGGATTACG TTAGATGATG GCGTCACCGA GACCGATTAC
GGTTTCGGGC CAGAGAGCAG TGGTTCTCCG TGGGGCCAGG GAACAATTTA CAATAACGAC
AGCAGTACAT ATCAAGGCGC GACTATCTAT CAAAATACTT TTGAAGTGAG CGAGGCTCAA
TACCAAGCCA TTCAAAATTT TGTGCAAAAC CCGGCGGCCA GCGGATTTTC CTCATACTAC
AATTTCGATG GCAATAGCTG TGTAAATTTT GTGTGGGACG CTCTCTCAAC CGTAGGGATT
CAGAGCCCGC CTGCATCCAG CATTCCTCTG ATGCCCGGGG CAAATGAAAT CTTTTTCAAT
AATGCTATTG CATATTTTGA GGCCGGCAAT ATATCGCTGG ACCTCCCAAA TTTCGCGCCT
AACATTCCGT CTTCAGTGCC AGATGGTGGA CAAGTGAGCA ATGGAGACTA CGTCGGCCAA
ATTCTCCAGT TTTTCAACAG AGGCATGGTC GATCCATTGG TAATTGATTT ATCCGGCAGT
GGGATCCAAC TCACTCCCTT GAATGATTCG AACGCGTACT TTGACCTGCA TGATACGGGA
TTTGCGGTTC ATACGGGATG GGTCGGACCG GAATCGGGGC TACTCGTTCA GGACAACAAT
CACAACGGGA GCGTTGATAA CATTACCGAA TTGTTTGGAA GTTCGACTAA CGACGGGTTT
ACCGCGCTGG CCGCTCTCGA CGCGAACAAT GATGGAATCC TCGACGCGCA AGATGCCGGC
TTCACCAGCC TCGACCTGTG GACGGATACG AATGGAAACG GGGCGACTGA TCCGGGTGAG
CTCCATTCGC TTTCAAGCCT TGGTATCGCA TCGATCAGTC TGTCAGCAGC ATCAGTGAGC
CAGAACGTCG GTGGAAACGA GATCAGAGAA ATTGCGACTT ATACGAAATC TGACGGCACC
ACGGGCGAGA TTGGAGAGGC ATATTTCGAC AATAGCCAAC TCGATTCGCG CTTTACGGGT
AGCTACCAGT TCAATCCGGC TGTACTTTCG TTGCCGAATT TGCGTGGCTA TGGGCTATTG
CCGGATTTGT ACATCGCTAT GAGCATCGAT CCCACGTTGC TTCAGATGGT GCAATCGCTG
TCCACTCAGA GCATCGCGGA TGCCGCAAAT TTTTCGTCGG ACGTTCGCCA GATTCTTTAC
CAATGGGCTG GTGTTACAAA TGTTGATCCA ACAAGCCGCG GCGTTTATAC CAACGCGCAG
GAACTCGGCG TCCTTGAGAA GTTCGCCGGG GAGAGCTATG TCGGCGGCAT CCACGGTAGT
GGAAATCCAT TCAGCCCGCA TCAAGCGGAA AATATTCAGG CGGCCTTTGA CCGCCTGATG
GTGGGGGTGG AAACCAGGCT GCTTGTCCAG GGACCCCTTG CATCGATAGT TCCTAGTGCT
GTGTATAACT ACGATACAGA TTCGATAGTT GGTGCGGTGG ACTTCTCGGC GCTAATCGGC
CAATTCTCAG CAAATGCTCC GGTCGCATCC ATGGACGCCG AACGATATTG GAGCCGTCTT
GGTCCCGTCA TAGAGTCGCT CGGCGCCTGT CTCGGTGCAG AACAGCGCGT TGTAGAGGCA
GCATTCCAAG CGCAACTCGA TAGTTTTCAG CTCGCTTTCA GCGCAAAGCA AGCGTTAGAC
GGCAATGTGT TGCTCGGAGA TGGCTCGACA GAAAATCTGT ACGCGACTAC CGAGGGCCGG
CATTACTTCG ATGGTGGAAG CGCGGTAAGA CTCGAAACCA GCCATGGTGG CGGCGATACG
TTTGTCTTCA ATGCAGGTTA CGGGAGCCTT GAGATCAATG AGCTCGAGTT CAATTCCAGC
AACGTCAACG TGCTGAAGCT AGGCCCCGGA ATTAGCGCGG CGTCGACCGT CGTGACGGCT
GACAACGCAG GCAACATTTT CCTGCAAGAC GGAATGACCG GCGACCGCAT CCAACTCGAC
GGGATGCTGT CGGTCTATGG CACGCTGAGC GCCAGCTCTG GGGTTCAGCA GGTGCAGTTC
GCAGACGGCA CGACGTGGAG CGCGCAGCAG CTGGTGCAAA TGGCCCATCA GGTGAACGGC
ACAACGGGCA GCGATACCTT GCGCGGCACG TACGGAGGCG GCGATACATT TGATGGCAAG
GGTGGCGGCG ACGTCGTAAT CGGCAATGCA GCCAATGACA CGTTTGTCTT CAACGCCGGC
TATGGCAGCC TGGAGATCAA CGAGCTTGAC CTCCACTCAA GCGATGTCAA TGTGCTGAAG
CTCGGCCCGG GCATCAGCCC GTCGTCGATC GGCGTGACAG GCGACAGCAG CGGCAATTTG
TATATCACCG ATGGCACGTC GGGCGACCAG ATCAAACTCG ACGGCTTGCT GAGCGGGTCA
TACTACGGGA TCCAGCAGGT CCAGTTTGCC GATGGCACGA CATGGAGCCG AGCGCAACTC
CTTAACGTTG CAACGACAGG GACCGCGGGC AACGACACGC TTTACGGGTC CAGCGCCGCC
GATGTGTTCG ACGGCAAAGG CGGTAGCGAT CGAGAGATCG GCAACGGCGG CGGCGATGCG
TTTATTTTCA ATGCAGGCTA CGGCAGCTTG GAGATCAACG AATTTGACAC CAATTCGAAC
AACGTCAACA TGCTGAAACT CGGTCCTGGC ATCAGCGCCG CGTCGACCAT CGTGACGGCT
GACAACGCGG GCAACCTTTT CCTGCAAGAC GGGACGGCCG GCGATCGTAT CCAGCTCGAC
GGGATGTTGT CGGTCTATGG GACGCTGAGC GCCGCCTCCG GCGTCCAGCA GGTGCAATTC
GCGGACGGCA CGACATGGAG CGCTCAGCAG CTGGTGCAAA TGGCCCATCA GGTGAGCGGT
ACGACCGGCG GCGATACCTT GCGCGGGACG TACGGTGGGG GCGATACGTT CGACGGCAAG
GGTGGAGGTG ATGTCGTCAT CGGAAATGGC GTCAATGACA CATTTGTCTT CAATGCCGGC
TACGGCAGCC TGGAAATCAA CGAGTTTGAC GCCAACTCAA ACGACCTCAA CGTGCTGAAG
CTTGGCCCTG GCATCAGCGC CGCATCGACC ATCGTGACGG CTGACAACGC GGGCAACATT
TTCCTGCAAG ACGGGACGGC CGGCGATCGT ATCCAGCTCG ACGGGATGTT GTCGGTCTAT
GGGACGCTCA GCGCCGCCTC CGGCGTTCAG CAGGTGCAGT TCGCAGACGG CACGACATGG
AGCGCGCAGC AGCTGGTGCA AATGGCCCAT CAGGTGAACG GCACGACCGG CAGCGATACC
TTGCACGGTA CGTACGGTGG GGGTGATACG TTCGACGGCA AGGGTGGAGG CGACGTCGTC
ATCGGCAATG GTGCCAACGA CACGTTCGTC TTCAATGCCG GCTACGGCAG TCTGGAGGTC
AACGAGTTTG ACTTCAACTC GAACGACGTC AACGTGCTGA AGCTCGGCCC CGGCATCAGC
CCATCGTCGA TCAGTGTGGC GGTCGACGGC AACGGGAATC TGTATGTCAG CGACGGCATA
TCGGGCGACC AGATCAAGCT CGACGGCTTG CTGAGCGGGT GGTATTACGG GATTCAGCAG
GTCCAATTTG CCGATGGCAC CACATGGAGC CGATCGCAAT TGATCAATGC CGCCACGACG
GGCACCGCGG GCAACGACAC GCTTTATGGG TCAAGCCGCG CCGACGTATT CGATGGCAAA
GGCGGTAACG ATCGAGAGAT CGGCAACGGC GGCGGCGATA CGTTTATTTT CAATGCAGGC
TACGGCAGCT TGGAAATCAA CGAGTTTGAC ACCAACTCAA ACGACCTCAA CGTGCTGAAG
CTTGGCCCTG GCATCAGCGC CGCATCGACC ATCGTGACGG CTGACAACGC GGGCAACATT
TTCCTGCAAG ACGGGACGGC CGGCGATCGT ATCCAGCTCG ACGGGATGTT GTCGGTCTAT
GGGACGCTCA GCGCCGCCTC CGGCGTTCAG CAGGTGCAGT TCGCAGACGG CACGACATGG
AGCGCGCAGC AGCTGGTGCA AATGGCCCAT CAGGTGAACG GCACGACCGG TAGCGATACC
TTGCACGGTA CGTACGGTGG GGGTGATACG TTCGACGGCA AGGGTGGAGG CGACGTCGTC
ATCGGCAATG GTGCCAACGA CACGTTCGTC TTCAATGCCG GCTACGGCAG TCTGGAGGTC
AACGAGTTTG ACTTCAACTC GAACGACGTC AACGTGCTGA AGCTCGGCCC CGGCATCAGC
CCATCGTCGA TCAGTGTGGC GGTCGACGGC AACGGGAATC TGTATGTCAG CGACGGCATA
TCGGGCGACC AGATCAAGCT CGACGGCTTG CTGAGCGGGT GGTATTACGG GATTCAGCAG
GTCCAATTTG CCGATGGCAC CACGTGGAGC CGATCGCAGC TCATCAATGC CGCCACGACG
GGCACTCCGG CGGACGACAC GCTTTATGGG TCAAGCCGCG GCGACGTGTT TGATGGCAAA
GGTGGGAATG ATCGCGAGAT CGGCAACGGC GGCGGCGACA CCTTCCTCTT CAATACCGGC
TACGGCAGCC TGGAGGTCAG CGAGTTCGAT TACAACCCCA GCAACGTCAA CGTGCTGAAG
CTCGGCCCTG GCATCAGCGC CGCGTCGACC ATCGTGACGG CTGACAACGC GGGTAACGTC
ATCGTGCAAG ACGGGACGTC CGGCGACCGC ATCCAGCTCG ACGGGATGAT TTCGGTTTAT
GGCACGCTGA GCCCGAGCTC CGGTGTTCAG CAGGTACAGT TCGCAGACGG CACGACATGG
AGCGCTCAGC AGCTGGTGCA AATGGCCCAT CAGGTGAGCG GTACGACCGG CAGCGATACC
TTGCGCGGGA CGTACGGTGG GGGCGATACG TTCGACGGCA AGGGTGGAGG TGATGTCGTC
ATCGGCAATG GCGCCAATGA CACGTTTGTC TTCAATGCCG GCTACGGCAG CCTGGAGGTC
AACGAGTTTG ACTTCAACTC GAACGACGTC AACGTGCTGA AGCTCGGCCC CGGCATCAGC
CCGTCGTCGA TCGGCGTGAC GGGTGACAGC AGTGGCAATC TGTATATCAG CGACGGCACG
CCGGGCGACC AGATCAAACT CGACGGCTTG CTGAGCGGGT GGTATTACGG GATCCAGCAG
GTACAGTTTG CCGACGGCAC GGCATGGAGC CGAGCGCAGC TCGTCAATGC CGCCACGACG
GGCACCGCAG CGGACGACAC GCTTTACGGA TCAAGCACCG CGGACGTGTT CGATGGCAAA
GGCGGGAATG ATCGGGAGAT CGGTAACGGA GGCAACGACA CCTACGTTGT TCGAGCAAGT
TATGGCGGCT TAACGATCGT GAACGGCATC CCGAACAATA ACGTTGCTCA AGGGAATTTA
CTTGTTGACG GTGCGAATCC GGAGAATGTC TGGCTGCAAC AAGTCGGAAC TGACTTGCAC
GTCGATTTGA TGGGGACCAC GACAAGCGCA ACGATCCAAA ACTGGTTCGG AAGCTCGTAT
AGTGCTCTCG CCGAACTCAC GGTCGCTGGC GGCGGAAGCG GTGGCGCGAC GCTCGACACG
CAGGTCAATC AATTGATACA GGCAATGGCC ACGTTCAGCG AGAGCAATCC AGGATTTGAT
CCAACATCAA GCGCGAACCC ATCGATTACC GATCCCACGT TACTCGCAGC GGTAAATACT
GCTTGGCACC ATCAATAG
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| Protein sequence | MPYTVTVNTV PAGAPEVGGA TSFGGHAWIT LDDGVTETDY GFGPESSGSP WGQGTIYNND
SSTYQGATIY QNTFEVSEAQ YQAIQNFVQN PAASGFSSYY NFDGNSCVNF VWDALSTVGI
QSPPASSIPL MPGANEIFFN NAIAYFEAGN ISLDLPNFAP NIPSSVPDGG QVSNGDYVGQ
ILQFFNRGMV DPLVIDLSGS GIQLTPLNDS NAYFDLHDTG FAVHTGWVGP ESGLLVQDNN
HNGSVDNITE LFGSSTNDGF TALAALDANN DGILDAQDAG FTSLDLWTDT NGNGATDPGE
LHSLSSLGIA SISLSAASVS QNVGGNEIRE IATYTKSDGT TGEIGEAYFD NSQLDSRFTG
SYQFNPAVLS LPNLRGYGLL PDLYIAMSID PTLLQMVQSL STQSIADAAN FSSDVRQILY
QWAGVTNVDP TSRGVYTNAQ ELGVLEKFAG ESYVGGIHGS GNPFSPHQAE NIQAAFDRLM
VGVETRLLVQ GPLASIVPSA VYNYDTDSIV GAVDFSALIG QFSANAPVAS MDAERYWSRL
GPVIESLGAC LGAEQRVVEA AFQAQLDSFQ LAFSAKQALD GNVLLGDGST ENLYATTEGR
HYFDGGSAVR LETSHGGGDT FVFNAGYGSL EINELEFNSS NVNVLKLGPG ISAASTVVTA
DNAGNIFLQD GMTGDRIQLD GMLSVYGTLS ASSGVQQVQF ADGTTWSAQQ LVQMAHQVNG
TTGSDTLRGT YGGGDTFDGK GGGDVVIGNA ANDTFVFNAG YGSLEINELD LHSSDVNVLK
LGPGISPSSI GVTGDSSGNL YITDGTSGDQ IKLDGLLSGS YYGIQQVQFA DGTTWSRAQL
LNVATTGTAG NDTLYGSSAA DVFDGKGGSD REIGNGGGDA FIFNAGYGSL EINEFDTNSN
NVNMLKLGPG ISAASTIVTA DNAGNLFLQD GTAGDRIQLD GMLSVYGTLS AASGVQQVQF
ADGTTWSAQQ LVQMAHQVSG TTGGDTLRGT YGGGDTFDGK GGGDVVIGNG VNDTFVFNAG
YGSLEINEFD ANSNDLNVLK LGPGISAAST IVTADNAGNI FLQDGTAGDR IQLDGMLSVY
GTLSAASGVQ QVQFADGTTW SAQQLVQMAH QVNGTTGSDT LHGTYGGGDT FDGKGGGDVV
IGNGANDTFV FNAGYGSLEV NEFDFNSNDV NVLKLGPGIS PSSISVAVDG NGNLYVSDGI
SGDQIKLDGL LSGWYYGIQQ VQFADGTTWS RSQLINAATT GTAGNDTLYG SSRADVFDGK
GGNDREIGNG GGDTFIFNAG YGSLEINEFD TNSNDLNVLK LGPGISAAST IVTADNAGNI
FLQDGTAGDR IQLDGMLSVY GTLSAASGVQ QVQFADGTTW SAQQLVQMAH QVNGTTGSDT
LHGTYGGGDT FDGKGGGDVV IGNGANDTFV FNAGYGSLEV NEFDFNSNDV NVLKLGPGIS
PSSISVAVDG NGNLYVSDGI SGDQIKLDGL LSGWYYGIQQ VQFADGTTWS RSQLINAATT
GTPADDTLYG SSRGDVFDGK GGNDREIGNG GGDTFLFNTG YGSLEVSEFD YNPSNVNVLK
LGPGISAAST IVTADNAGNV IVQDGTSGDR IQLDGMISVY GTLSPSSGVQ QVQFADGTTW
SAQQLVQMAH QVSGTTGSDT LRGTYGGGDT FDGKGGGDVV IGNGANDTFV FNAGYGSLEV
NEFDFNSNDV NVLKLGPGIS PSSIGVTGDS SGNLYISDGT PGDQIKLDGL LSGWYYGIQQ
VQFADGTAWS RAQLVNAATT GTAADDTLYG SSTADVFDGK GGNDREIGNG GNDTYVVRAS
YGGLTIVNGI PNNNVAQGNL LVDGANPENV WLQQVGTDLH VDLMGTTTSA TIQNWFGSSY
SALAELTVAG GGSGGATLDT QVNQLIQAMA TFSESNPGFD PTSSANPSIT DPTLLAAVNT
AWHHQ
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