| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6646 |
|---|
| Symbol | |
|---|
| ID | 6181792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010553 |
|---|
| Strand | + |
|---|
| Start bp | 141731 |
|---|
| End bp | 142807 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641685405 |
|---|
| Product | CblD family pilus biogenesis initiator protein |
|---|
| Protein accession | YP_001812310 |
|---|
| Protein GI | 172064660 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.408752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000000370666 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCGC CCGCCAGCCG AAACGACACG GTGGAGGCCA CGCGCGACCG CGGCGCGCCC
CTGGGCGATG TGGTGATCTT CGACGACGTG TCGGGCGGCT ATGACACGAG CGACTACGCA
AAGTGGTCGC GAAACTCCTG GACATGCAGG TCGACCACCG ACACGTCGAC GGGCGCGTGC
GCAACGCAGC CGGCCTGGCA GCTCGGGGGG GGCTCGACGG TCATCAAGCT CTCGTTCAAG
GAAGCGAAGA CTGGCGCGAC GGCCGTGCTG AACCTTCAAG GGCTGGCGTG GTCCGTTTTT
CATCGGGACT GCAACAACAA CCTCATTCAG GCACACAAAG GCGTGCAGAA GGCGATCGAG
ATTGCGACGA GCTCGTACTG GCTCCACTGT CCCGGCATTG GTAGCGACGG GACGGTCCTG
AGTGTCACGA TTCCCGCCGC GGAACTCAAG AAGCTGCCGT CCGGCGGCGA GTGGAACGCG
AACCTGGCGC TGAACCTGAG GGCATGGGAA CGGACTACGT TGCCGACGCT TGCCGTATTC
GAGGCGGCGA TCAAGCTGAA CGTCACGGAC AAGAACAACA TCCAGGTGTA TCTGCCCGAG
TTCACGACTG CGACGCCCGT CGTCGACCTC AAGCTGCGCA CGCTGCCGAA TGGCAGCCGG
ATGGCCGGCA CGGCCAACGT CGACATGTGC CTGTACGACG GCTACAACTC GCAGAGCACA
TGGTTCGACG TATCGGCGAC CGACGGTCTC ACGATCGACC GGCGCGACAA GGGCCGCTAT
TCCGTCCTGC TCGACGCCGA CCGAAGCGGC GCCTACGCGT CGCGCGTCGA CTACAACGTG
AGCCTCACTT ACGCCGGCAA GAAGATCGAC TTGCGGAACA ACGAGACGGT GCGGCTGCAG
GGCGTGAACA ACAGCGCCGG CCGCTCCGTA TCGCTGCCCG GCATATCGGT GCCCGTGGTG
TGCACGCCGA CGCCTCTGAC GCTCGAGACG CCCGAGTTCC AGTCGGTCTG GAAGCGTCCG
GGCACGTACA GCAACAAGCT GACGATCATG TTCACGCCAT CGTCCGCCGG CCTTTAG
|
|---|
| Protein sequence | MQAPASRNDT VEATRDRGAP LGDVVIFDDV SGGYDTSDYA KWSRNSWTCR STTDTSTGAC
ATQPAWQLGG GSTVIKLSFK EAKTGATAVL NLQGLAWSVF HRDCNNNLIQ AHKGVQKAIE
IATSSYWLHC PGIGSDGTVL SVTIPAAELK KLPSGGEWNA NLALNLRAWE RTTLPTLAVF
EAAIKLNVTD KNNIQVYLPE FTTATPVVDL KLRTLPNGSR MAGTANVDMC LYDGYNSQST
WFDVSATDGL TIDRRDKGRY SVLLDADRSG AYASRVDYNV SLTYAGKKID LRNNETVRLQ
GVNNSAGRSV SLPGISVPVV CTPTPLTLET PEFQSVWKRP GTYSNKLTIM FTPSSAGL
|
|---|
| |