| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6577 |
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| Symbol | |
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| ID | 6181577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010553 |
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| Strand | - |
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| Start bp | 68348 |
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| End bp | 70480 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641685346 |
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| Product | integrase family protein |
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| Protein accession | YP_001812251 |
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| Protein GI | 172064601 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00328143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATCA ACGAACCTGA TGTGCTCGAT GTCGAGTTTC GCGAGCTGCC GGCCACGCCG
CGTCGCGCGC CTACGCCTGC CGCCCGCCGC AAGTCGCGCT CGCGGCAGGC ACGCCGCGAC
GCGGCCGCCC AGCGCCGGAT CGGCCTGCAG CACCTCGCGT TCTTCCGCGG CTACCTGGAA
GGACTGGATC TCGCCGAGCT AGCCGACCAG TACCTGGAAT TCGGCCGGGA CGCGCGCAAG
GCCGCCGCGA CGCGCACCTG GCTGGTGACG GCGTTCGTCG CCGCGGCGCG CAAGCGCCAG
GACTTCGCGA CCGCCCGACT GCTGGCGATC CGGCCGGCCG CGCTTGCCGC GACGCCGGCG
TCCGACGCCG GGGTGCCCGC CGCGCCGTCG CTGGAGGATT TCGCGGCCGA GCACGACCCG
GACGGCTTCT ATACGGAAAA GGAGCTGCTC GATCTGTTCG CCGCCCGGCA CGCCGGCGCG
GACACCGACG CCGGCGCGAC CCTGCGCCGC CAGCAGCGCA ATACGCGCCT GCGCGCCCGG
CAGATGGCGG CGCTCGAGGC GCTCGCGCGC CTGGTGGTCG AGGATCCGCG CCCCGAGCAC
CACGTGCTCG GTTGGTTCGA TACCGCGGTC GCGCTGCGCC TGGCCGACGT CGGGCTCACC
ACGATCGGCA AGCTGGTCGA GACCATCAAC ACGCTCGGCT ACCGCTGGTA TCGGCGCGTG
CCGCGCCTCG GCGAGATCGG GGCCCGGCGC ATCACCGCGT GGCTGGCCCA CTACGGGGAC
GTCGCGGGCC TGCAGCTGGC CGCCGGCGTG CAGGTCCACC CGTCCGAGCG CACGCTGCCC
GGCCCGCCGC TCACCGCAGC CGGCCCGGTC ACCGCCATCG TGCCGCTCGA GCGTTTCCTG
CTGCCGCCCG AACTGGACGG CTCGCGCGGC GCGCACCGCA ATCTGGTCAA GAACAACAGC
CGCGCGAACA ACGACCGCGA GGCGATCGAC TTCTGGCTCG CCGACTACGA GAACCCGCAT
ACTCGCCAGC GCTATCGCAC CGAAGCCGAA CGACTGCTGC TCTGGGCGAT CTTCGTGAAG
CGCAAGGCGC TCTCGAGCCT CGACACCGAC GATGCGCGCG ACTACATCAA CGGTTTCCTG
ATCGATCCAC AGCCGGCCAG CCAATGGGTG ATGACCGGTA CCGCGCATCG CGGCGATCTG
GGCTGGCGGC CGTTCCGCGG GCCGCTATCG GTCAAGAGCC GGCAGGACGC GCTGTCCGCG
CTGAAGAAGT TCTTCGGCGA GCTCGTCGAC GCCCAGTACC TCGACCACAA TGCGTTCGCG
AAGGTTCGTG TGTTCACCGG GTCGACGCAC GACGCCGCCG GCAACGAACG GCGCGTGGCC
GCCAAGTCGC GTCTGCGGAT CGAGCGCGGC TTGACCGCCG ACGCTTGGCG CTTCGCGATG
CGCGTCCTCG ACGCGATGCC GGACACGGCC GCCGCGACAC GCATGCGCTT TGTGCTGGGC
TTTGCGTACA GCACCGGGCT GCGGCGCGCC GAGTTGTGCG GGGCCTTCAC GGACGACGTG
CAGGAGCGCT ACGCCGGCCC CGAGTTGGGG ACGATCCGGT TGCTGCGCGT GGTCGGCAAG
CGCGCGAAGG AACGCTTCGT CCCGCTGGTC CCAGCGGTGC TGACCCTGAT GGGCGATTAC
CTGGAATCGC GCGGCCTGCC GCGCGATCCC CTCGCCTGCC CGGCCGCCAC CCCGTTGATC
CCGGCGCTGC TGTCGAATGC CGAGATCGGC AAGATCCAGC GCGCGGCGAA GGCGAGCAAA
ATCGATCCGG TGCCCGAGCT CGCCGCGCGG GCGCGACAAA CCGGGCCGAT TCACCCGGTG
CAGCTCTACA AGGCAATCAA GCAGTTTTTC GCGACGGCAA CTGCGGCGGC GCTGCGCGAG
GATTCACCGC ATGCGCGGGC CTTCAGCGCG GCCAGCCCGC ATTGGCTGCG ACACACCTTT
GTGTCGCACG CGTTGGCAAA CGGCATGAGT CTCGAGAGTG CGCGGAATTT TGCAGGTCAC
GATTCACTCG ACACCACGTC GATCTACGCG ACTGCGGAAC TCGGCCGGCA GTACCTCGAG
GCCGAGGCTT TCCTCAAACG GGCGTTGATC TAA
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| Protein sequence | MPINEPDVLD VEFRELPATP RRAPTPAARR KSRSRQARRD AAAQRRIGLQ HLAFFRGYLE
GLDLAELADQ YLEFGRDARK AAATRTWLVT AFVAAARKRQ DFATARLLAI RPAALAATPA
SDAGVPAAPS LEDFAAEHDP DGFYTEKELL DLFAARHAGA DTDAGATLRR QQRNTRLRAR
QMAALEALAR LVVEDPRPEH HVLGWFDTAV ALRLADVGLT TIGKLVETIN TLGYRWYRRV
PRLGEIGARR ITAWLAHYGD VAGLQLAAGV QVHPSERTLP GPPLTAAGPV TAIVPLERFL
LPPELDGSRG AHRNLVKNNS RANNDREAID FWLADYENPH TRQRYRTEAE RLLLWAIFVK
RKALSSLDTD DARDYINGFL IDPQPASQWV MTGTAHRGDL GWRPFRGPLS VKSRQDALSA
LKKFFGELVD AQYLDHNAFA KVRVFTGSTH DAAGNERRVA AKSRLRIERG LTADAWRFAM
RVLDAMPDTA AATRMRFVLG FAYSTGLRRA ELCGAFTDDV QERYAGPELG TIRLLRVVGK
RAKERFVPLV PAVLTLMGDY LESRGLPRDP LACPAATPLI PALLSNAEIG KIQRAAKASK
IDPVPELAAR ARQTGPIHPV QLYKAIKQFF ATATAAALRE DSPHARAFSA ASPHWLRHTF
VSHALANGMS LESARNFAGH DSLDTTSIYA TAELGRQYLE AEAFLKRALI
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