| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6440 |
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| Symbol | |
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| ID | 6182787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010557 |
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| Strand | - |
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| Start bp | 1053205 |
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| End bp | 1055736 |
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| Gene Length | 2532 bp |
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| Protein Length | 843 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641689562 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001816421 |
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| Protein GI | 172065709 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.720009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.358804 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCACA CCGCACTTTA TAAGACGTTG CGTCTGGGCG ACGCGCAATA CAATCGTCTT
GTCAAACTCG ACACGCCGCT TGGCGTCGAC TGGTTATTGC CGCTCTATGT GAAAGGCACC
GCTCGGCTCG GTCGCGATTA CGAATTCGTG ATTGATGCCG TTTCACCACG CGGTAGCCAG
ATTGAACTGA GTGCGCTGCT CGCCAAGCCG GTTACGCTCT GGATTCAGCA GACGGACGGC
TCATACATGC CGATCCATGG CTACGTTCAC CGATTCAGCA GGCTGGGCGC AGATGGGCCG
TTGACTTTTT ACAAGCTGGC GTTCTCGTCC TGGCTCTATT TCTTGCGCCT GCGCCGCGAC
ATGCGCGACT GGCAGGAGCA GAACGGTGAG CAAATTCTGA CCGATGTGTT CAATGAACAT
CCGCAAGCGC GCGGCGCGTA TCGCTTTGAT CTGCACAAGC CGCTGCCGTC GTACTCGAAT
CGTGTGCAGT GGGAATACGA CCTGAACTTT GTCCATCGTA GTCTCGAAGA AGTGGGTGTG
TTCCCATACT TCGAGCATGC GGACGATGGC CGGTCGCACA CGATGGTTTT GACGGACGAC
GTTTATTTCG TCCCGCAGCT GAAGCAGCCG GTTGTGGAGT TTGGCTCTAC GGAAATTAGT
GGCGAACTGG ATGGGTTCGC GCAATGGAAG GAGCAGCTCC AGATCGACAG TGCGCAATTG
ACGTCGCGCT CGTTCGACTA CAAACGCCCG GACCTTCCAC GGCAGGTGCA GGGCGTGACG
GACGTGAACG GCGAGTTGCC GACCGATGGG GAAATCTACG ACTACCCTGG CGCGTACATG
TGGTCGGACC GTGAGCAAGG TGAGCGTCTT GCCCAGATTC GGCTTGAAGA GCGCAAATCG
CGGATGAAAC GTTTTCACGG AATAGGCGGC TTGCGCTGCG CGATGCCGGG GCGGCGCTTC
GAACTTCGCG GTCATCCGGT GCATGACGCG GGTAGTCAAC CGGATCGCGA ATTTGTTCTG
CTTGGGGTTG ACTGGCTGAT TTGCAATAAC CTGCCTGGTC TGGACGAGGC GGATCAATTT
CCCGACGGGC TGGCTGCGGA AGTTGCGCAA GCGAAGGCTG GCGCGACGGT TCGCCACGCA
GACGGCAGCG AAGGTTTCTT TCAGGTGGTG GTTGAGGCGC AGCCGCGCAA CGTCCCGTTC
CGTAGCCCGT TCGAACACAA GAAGCCGGTG ATGCAGTTGC AGAATGCAAT CGTCGCCGGG
CCGAGCGGGG AAGAGGTGTA CACCGATTCA CTGAACCGGG TGAAGGTGTG GTTCCACTGG
AATCGCCGCA ATGGCCAGGA TGAACGTGCA TCATGCTGGG TGCGCCCGAC GTTCCTTGAT
GCAGGCTCGA ATCGTGGTGG GATTCAGCCG CTGCGCAAGG GCGACGAAGT GGTCGTCGGT
TTCATGGAAG GTGACTGTGA CCGGCCCGTC ATCATCGCGA GAATGTACGG GGGGGCTACG
CAGCCGGTGT GGCACACGAA CGGCTTGCTG TCCGGTCAAC GCTCGCGTGA GTACGGCGGC
ACGGGCTACA ACCAGCTCGT AATGGACGAC TCGACGCAGC AGAATCGGGT TCACCTTTAC
TCGAGCAGCT ATCGGTCCCA CTTGCACCTG GGGTACCTGA TCCAGCAGAC CGACAATACG
CGCGGCGCTT TCCTTGGAAG CGGCTTTGAC CTTAAATCAG ACGCCTACGG CGCCATCCGG
GCGGGGCAGG GCTTGTTCGT ATCTACCCAC CCGACAGCCG CGAACCAACC ATTGAACGTA
ACGGCTGCGT CCGAGCAGTT AGCCAGTGCG GAAACCGTTG TGGATTTGAC GTCGCAGGCG
AGCTCGGCGA ATCAGGCCGA AAGTTTGCAG GAAGGGCAGG ACGCACTCAA GAAGTTCACC
GATGCGACGC ACTATAGCGT GAGCGGCGGC GCCGGCAGCG GCGGTCGGAC TGGCGGCGGT
GGGACGGGTA ACGCGAACGG CTTTTCGACG CCGATCATGC TGATGGCGAG TCCTGCGGGC
TTGGGGCTGT CGACTCAGGA TTCGGCGCAA CTGACGGCCA ATCAGCAAGT CAATATCGTC
AGCGGTAAGA GCACGCACGT GGCGGCCGGC AAATCGCTGA TCGTAAGTGT AATGGAGAAG
ATTAGCCTGT TCGCGCAGAA CGCCGGAATC AAGCTCTTTG CGTCCAAGGG CAAGGTCGAG
ATCCAGGCGC AGAGCGACGA GATGAAGCTC GCAGCGCTCA ACGACGTGAC GATCACGAGT
TCGAATGGGA AAGTCGTCAT TTCGGCGGAG AAGGAGATCT GGATCGGTGC AGGCGGTTCG
TACATCAAGA TCACGCCCGA TCTGATCGAG AACGGGACCA GTGGTCAAAT TCTCGAAAAG
TGCGCGAGCT GGGACAAGCC GGGTGCGTCG TCGATGCGCC TGCCTTCGCA GATTGCGAGT
GTGCCGAAGG GGTGTGCATG GAAGACGGCT TCGGCGTCTG CAGATAGCGC TTCGAGCGTT
GTGCTGGAGT AA
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| Protein sequence | MGHTALYKTL RLGDAQYNRL VKLDTPLGVD WLLPLYVKGT ARLGRDYEFV IDAVSPRGSQ
IELSALLAKP VTLWIQQTDG SYMPIHGYVH RFSRLGADGP LTFYKLAFSS WLYFLRLRRD
MRDWQEQNGE QILTDVFNEH PQARGAYRFD LHKPLPSYSN RVQWEYDLNF VHRSLEEVGV
FPYFEHADDG RSHTMVLTDD VYFVPQLKQP VVEFGSTEIS GELDGFAQWK EQLQIDSAQL
TSRSFDYKRP DLPRQVQGVT DVNGELPTDG EIYDYPGAYM WSDREQGERL AQIRLEERKS
RMKRFHGIGG LRCAMPGRRF ELRGHPVHDA GSQPDREFVL LGVDWLICNN LPGLDEADQF
PDGLAAEVAQ AKAGATVRHA DGSEGFFQVV VEAQPRNVPF RSPFEHKKPV MQLQNAIVAG
PSGEEVYTDS LNRVKVWFHW NRRNGQDERA SCWVRPTFLD AGSNRGGIQP LRKGDEVVVG
FMEGDCDRPV IIARMYGGAT QPVWHTNGLL SGQRSREYGG TGYNQLVMDD STQQNRVHLY
SSSYRSHLHL GYLIQQTDNT RGAFLGSGFD LKSDAYGAIR AGQGLFVSTH PTAANQPLNV
TAASEQLASA ETVVDLTSQA SSANQAESLQ EGQDALKKFT DATHYSVSGG AGSGGRTGGG
GTGNANGFST PIMLMASPAG LGLSTQDSAQ LTANQQVNIV SGKSTHVAAG KSLIVSVMEK
ISLFAQNAGI KLFASKGKVE IQAQSDEMKL AALNDVTITS SNGKVVISAE KEIWIGAGGS
YIKITPDLIE NGTSGQILEK CASWDKPGAS SMRLPSQIAS VPKGCAWKTA SASADSASSV
VLE
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