| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5505 |
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| Symbol | |
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| ID | 6181348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2758882 |
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| End bp | 2760135 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641685260 |
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| Product | squalene-associated FAD-dependent desaturase |
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| Protein accession | YP_001812165 |
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| Protein GI | 172064514 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1232] Protoporphyrinogen oxidase |
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| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.342763 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0220988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGAA CCGTCCACGT GATCGGTGCA GGACTCGCGG GCCTGTCGGC CGCCGTCGAG
CTGCAACGTC GCGGGCGGCG CATCGTGCTG CACGACGCGC ATGCGCACGC GGGCGGCCGC
TGCCGCTCGT GGTTCGACGG GACGCTGAAC ACGACGCTCG ACAGCGGGCT GCATCAGGTG
TTCGCGGGGC AGCCGGCGAC GCAGCGCTAC CTGCGTGCGA TCGGCGCGGC CGATCAGCTC
ACGGGGCCCG CGCTGGCTGA ATGTCCGGTG GCCGACGTCG CGTCGCAGCA GCGCTGGACG
CTGCGCTTCG GCAACGGGCG CTGGCCGTCG TGGCTGTTCG ACGCCGCATC GCGCGCGCCG
GGCACCACGC CGCTCGACTA CCTCGCGCTG GCCTCGCTCG CGTTCGCGCG CACCGGCCGC
TCGCTCGCAC AGACGATGCG ATGTGACGGC GTGCTGTGGG ATCGTTGGCT GCGCCCCTAT
TTCCTCGGGG TGCTGAACGT CGAGCCGCGC CACGCGAGCG CCGAGCTCGC GCGCGCGGTG
CTGTGCGGCA CGTTCGCCTC GGGCGGCCCA GGCTGCCGGC CGCTCGTCGC GCGCCACGGT
CTCGGCAGCG CCTTCGTCGA ACCGGCGCTG CGGATGCTGC AGCACGGCGG CGCGCAGATC
CGGCTGAACT CGCGGCTCGA CGCGTTCGAA TTCGGCGCGC ACGGCAATGC GGTCGATGCG
GTCACGGTCG GCGGCGAGCG CGTGGATCTC GCGCCGGGCG ACGCGGTCGT GCTCGCCGTG
CCGCCCGAGG TCGCGCAGCC GCTCGTCCCG GATCTCACCG CGCCCGACAC GTTCAGCGCG
GTCGTGACCG CATACTTCGC GGTCGACGCA CCGGCCGGCG GCACGCCGCA GACGACCGTC
GTCAACGGCG TCGTCGACGC GGTGCGCGCC GGCGGCGGCA TGCTCGCGGC GACGATCCGC
GACGCGGGCC GCTGGCTCGA CATGCCGCGC GACGCGCTTG CGCGGCGCAT CTGGGAAGAC
GTTGCGCGCG TGAGCGGCGC GAACCCGGAA ACGATTCCCG CGTGGCAGCT CGTCGTCGAG
CCGCGCGCAG GCTTTGCGGC GGTGCCGTCG CAGGAAATGA AACGTCCGGC CGCGCGTACG
CGCTGGACCA ATCTCGTGCT GGCGGGCGAC TGGATTGCCA CCGGCTTGCC CGCCACGATC
GAGGGCGCGA TCCGTTCCGG CCAACTGGCC GCGGACGTGC TCCAGACACA GTAA
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| Protein sequence | MPRTVHVIGA GLAGLSAAVE LQRRGRRIVL HDAHAHAGGR CRSWFDGTLN TTLDSGLHQV
FAGQPATQRY LRAIGAADQL TGPALAECPV ADVASQQRWT LRFGNGRWPS WLFDAASRAP
GTTPLDYLAL ASLAFARTGR SLAQTMRCDG VLWDRWLRPY FLGVLNVEPR HASAELARAV
LCGTFASGGP GCRPLVARHG LGSAFVEPAL RMLQHGGAQI RLNSRLDAFE FGAHGNAVDA
VTVGGERVDL APGDAVVLAV PPEVAQPLVP DLTAPDTFSA VVTAYFAVDA PAGGTPQTTV
VNGVVDAVRA GGGMLAATIR DAGRWLDMPR DALARRIWED VARVSGANPE TIPAWQLVVE
PRAGFAAVPS QEMKRPAART RWTNLVLAGD WIATGLPATI EGAIRSGQLA ADVLQTQ
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