| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5200 |
|---|
| Symbol | |
|---|
| ID | 6180220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2399061 |
|---|
| End bp | 2399516 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641684956 |
|---|
| Product | RbsD or FucU transport |
|---|
| Protein accession | YP_001811861 |
|---|
| Protein GI | 172064210 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4154] Fucose dissimilation pathway protein FucU |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.491378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.136739 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAGA ATCTCGATCC GCTGCTGCAC GCCGACATCC TGCACGCGCT GCGCGCGATG
GGCCACGGAG ATGAAGTCGC GATCTGCGAC GCGAATTTCC CGGCGGAATC CGTCGCCGAG
CACACGGTGG TCGGCCGCGC GCTGCGCATC GACGGCGCCG ATTCGGCGCG CGTCGCGCGC
GCGGTGCTGT CCGTGCTGCC GCTCGACACG TTCGTCGATA CGCCCGCGTG GCGGATGGAA
GTCGTCGGCG ATCCGGCCGC GGTGCCGCCC GTGCAGCACG AGGTGCAGGC CGAGATCGAT
CGCGCGGAAG GTCGCGCGGT GCCGCTCGCG GGCCTCGATC GTTTCGCGTT CTACGAGCGC
GCGCAGCAGG CCTACGCGGT GATCGTCACC GGCGAGCTGC GCGGCTACGG CTGCTTTCTG
TTCAAGAAAG GCGTGCTGCT GAGCGACGCG GCTTAG
|
|---|
| Protein sequence | MLKNLDPLLH ADILHALRAM GHGDEVAICD ANFPAESVAE HTVVGRALRI DGADSARVAR
AVLSVLPLDT FVDTPAWRME VVGDPAAVPP VQHEVQAEID RAEGRAVPLA GLDRFAFYER
AQQAYAVIVT GELRGYGCFL FKKGVLLSDA A
|
|---|
| |