| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5007 |
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| Symbol | |
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| ID | 6179723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2163944 |
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| End bp | 2165083 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641684759 |
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| Product | porin |
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| Protein accession | YP_001811669 |
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| Protein GI | 172064018 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.167994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAA AGAAAGTTGC CGTAGCCGCT GCGCTTGCAT GCGCGGCCTG TATTCCCGCC
ATCGGCCATG CACAGAGCAG CGTGACGCTG TACGGGATTC TCGACGCGGG CATCACCTAC
GTGAACAACA CGGGCGGCTC GCACGTGGTC AAGTTCGACG ACGGCGTCGC ATACGGGAAC
CGTTTCGGCC TGAAAGGCAC GGAAGATCTC GGCGGCGGCC TGAAGGCCGT GTTCGTGCTC
GAGAGCGGTT TCCACCTCGG CAACGGGCAG CTCGGCTTCG GCGGGTCGGA GTTCGGTCGG
CAGGCTTATG TCGGTCTGCA GAACGACTGG GGCACGCTGT CGTTCGGCAA CCAGCTCGAC
ATCACCAACG AACTGGTGTC GATCTACAAC ATTTCCGCGT GGGGCAGCGG CTATGCGATC
CACCAGGGCG ACTTCGACCG CTTCAACGGC GACCGCCTGC CGAACTCGGT CAAATTCCTG
TCGAACGACC TGAGCGGCTT CAAGTTCGGC GCGATGTACT CGTTCGGCAA CGTCGCCGGC
AACTTCCACC GCAACAGCGC ATGGAGCGCG GGCGCGAGCT ACACGAAGGG CGACTTCTCG
ATCGGCGCCG CGTACACGCG CCTGAACAAC CCGAACGGCA TCTACGCGTT CGACCCGTAC
GCGATGATCG GCACGCATAC GTTCCTCGGC CAGCAGACCG TCACCGTCGA TCCGGCGACC
GGCGCGCGCA CCGACCTGTT CGCGAATACC GCGATGGACG TCGACAGCCA GGGCACGTTC
GGCGTCGGCA CGAGCTACAC GATCGGCAAG CTGACGCTCG ACGCGAACTA CTCGTACACG
ACGATCAAGG GCTTCGGCCA GTCGTCGCAC ATGCAGGTGT ACGAAGGCGG CGGCCTGTAT
CAGTTCACGC CGGCGCTTAG CTTCATCGCG GGCTACCAGC ACACGCGCTT CGAAGGCCAC
CACTGGAACC AGGGCACGGC CGGCCTCCAC TACCTGCTGT CGAAGCGCAC CGACGTGTAC
ATCTCCGGCG ATTACCTGCG CGCGTCGCAC GGTGTCGATG CGGTGGTCGG CTACAGCTTC
ACGCCGTCGA CCACGCAGAC GCAGGCCGAC GTGCGGATCG GCATGCGGCA TTCTTTCTGA
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| Protein sequence | MKQKKVAVAA ALACAACIPA IGHAQSSVTL YGILDAGITY VNNTGGSHVV KFDDGVAYGN
RFGLKGTEDL GGGLKAVFVL ESGFHLGNGQ LGFGGSEFGR QAYVGLQNDW GTLSFGNQLD
ITNELVSIYN ISAWGSGYAI HQGDFDRFNG DRLPNSVKFL SNDLSGFKFG AMYSFGNVAG
NFHRNSAWSA GASYTKGDFS IGAAYTRLNN PNGIYAFDPY AMIGTHTFLG QQTVTVDPAT
GARTDLFANT AMDVDSQGTF GVGTSYTIGK LTLDANYSYT TIKGFGQSSH MQVYEGGGLY
QFTPALSFIA GYQHTRFEGH HWNQGTAGLH YLLSKRTDVY ISGDYLRASH GVDAVVGYSF
TPSTTQTQAD VRIGMRHSF
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