Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4956 |
Symbol | |
ID | 6179478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2105966 |
End bp | 2107234 |
Gene Length | 1269 bp |
Protein Length | 422 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641684708 |
Product | diguanylate cyclase |
Protein accession | YP_001811618 |
Protein GI | 172063967 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.888162 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACGCT CCGCGCCCCC CATTTCGTCT TCACGCGTGC CGCGCCCGAC GCTGCAAAGC GTGCTGCGTC GCGCGCATTT GCGCCTCGCG TTCGTCGCGG TTGCGATGGC CGCCGTGTCG CTGATCGTCG TCGCCGTGAT CGCGTTGCGC GCGTATGCCG GCAACAACCT GAACCTGCTG GCCCGCTCGC TCGGCTATAC GGTCGAGGCG GCGCTCGTGT TCGGCGACCG CGTCGCGGCA AACGAGGCAA TTGCAACCAT TGCCAACGAC GAGGACGTCG CGCAGGTGGT CGTCACCAAT GCCAGGGGAC AGTTGTTCGC CACCTGGAAG CTGCCCGCCG AAGGCCGGAT CGCCCGAATC GAGCGCGGTG TCGCCGATCT CGCGCTGCCC GGGCCCGTGA CCATTCCGGT GATGCACGAC GGCATCGTCG TCGGTCAGGT CATCGTGCGT GGCCGCGGGC ATCAGTTTTT CGGATTCCTG CTCGGTGGCA TCGGCGGCAT TCTCGGCTGC CTGGTCGTCA GCGTGCTCGG CGCGTATGTC AGCTCGAAGC GTCTACTGCG CAACATCGTT GCGCCGCTGC GCGCGCTCGC CGGCGTCGCG CATGCCGTGC GGCGCGAGCG TGCGTTCGGG CGGCGCGTCG AGCCCGCGGC GATCGCCGAG CTCAACCAGC TCGGCGACGA CTTCAACGCG CTGCTCGACG AATTCGAAGA CTGGCAGAAC ACGTTGCGCG ACGAAAACGC ATCGCTCGAA CACAAGGCGA CGCACGATGC GCTCACCGGG CTGCCCAACC GTGCGCAGTT CGAGTCGCGT CTGTCGGTGG CGCTTTGCGA TGCCGTGGTG ACCGGGCAGC GGGTCGCCAT CCTGTATCTC GACTGCGACC GCTTCAAGGA GATCAACGAC TGCCTGGGCC ACGATGCCGG CGATGCGGTG CTGGTCGGTG TCGCGGGGCG GCTGCGCACG CAGGTGCGCG AGACCGATCT GGTCGCGCGC CTGGGCGGCG ATGAATTTGC GGTGATGCTG GGCACTGTGC GCGAAGTGGA AAGCGTGTGC CGGATCGCCG ACGAGATTTT GTCCGGCATG GTGCCGTCGA TCGAGCTGCC CGACGGACGC ATGGTGGCCA CCATGATGAG TGCCGGCGTG GCGCTGTATC CCGATCACGC GTCGGACGCG AACGGCTTGC TGCGGGCGGC GGATGCCGCG ATGTACCGCG CCAAGCGCAC GCGGCCGGGG ACGTGGCAGT GGGCGGAAGG CGTTGCCGGG CGGGTTTGA
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Protein sequence | MTRSAPPISS SRVPRPTLQS VLRRAHLRLA FVAVAMAAVS LIVVAVIALR AYAGNNLNLL ARSLGYTVEA ALVFGDRVAA NEAIATIAND EDVAQVVVTN ARGQLFATWK LPAEGRIARI ERGVADLALP GPVTIPVMHD GIVVGQVIVR GRGHQFFGFL LGGIGGILGC LVVSVLGAYV SSKRLLRNIV APLRALAGVA HAVRRERAFG RRVEPAAIAE LNQLGDDFNA LLDEFEDWQN TLRDENASLE HKATHDALTG LPNRAQFESR LSVALCDAVV TGQRVAILYL DCDRFKEIND CLGHDAGDAV LVGVAGRLRT QVRETDLVAR LGGDEFAVML GTVREVESVC RIADEILSGM VPSIELPDGR MVATMMSAGV ALYPDHASDA NGLLRAADAA MYRAKRTRPG TWQWAEGVAG RV
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