| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4527 |
|---|
| Symbol | |
|---|
| ID | 6180191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1631349 |
|---|
| End bp | 1632284 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684288 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001811199 |
|---|
| Protein GI | 172063548 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.207166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGATT TCACCAACAA GGTCGCCGCG ATCACGGGCG CCGGCTCGGG CATGGGCCGC
GCGCTCGCGG TCCAGCTCGC GCGGGCCGGC TGCCACGTGT CGCTCGCCGA CAAGAACGGC
GTCGGCCTCG CCGAAACCGA GCGGATCGTC CGCGCGATCG CGCCGAACGT ACGCGTGTCG
ACGCGCGTGC TCGACGTCGG CGACCGCGAC GCGATGTTCG CGTGGGCCGA CGACACCGCG
AAGGAGCACG GCAAGGTCAA CCTGATCTTC AACAATGCGG GCGTCGCGCT GTCGAGCACG
ATCGAAGGGA TGGAATACAG CGATCTCGAG TGGATCGTGA ACATCAACTT CTGGGGCGTC
GTGCACGGCA CGAAGGCGTT CCTGCCGCAC CTGAAGGCAT CGGGCGACGG TCACGTGATC
AACACGTCGA GCCTGTTCGG GATCTTCGCG CAGCCGGGCA TGAGCGGCTA CAACGCGACG
AAGTTCGCGG TGCGCGGTTT CACCGAATCG TTGCGCCAGG AACTCGACAT GATGAAGTGC
GGCGTGTCGG CAACCTGCGT GCATCCGGGC GGGATCCGCA CGAACATCGC GCAGGCGAGC
CGGGTCTCGA AGAACATGGT CGGCTTCATG GTCGCGAGCG AGCAGCAAGG CCGCGACACG
TTCGAGAAGT TCTTCATCAC GACCGCCGAC GACGCCGCGC GCACGATTCT CGCCGGCGTG
CGCCGGAACA AGCGGCGCGT GCTGATCGGC CGCGATGCGA AGGCCGGGGA CTGGATGGCG
CGCATCCTGC CGTCCGCGTA TCAGGCGCTC GTCGTGCTCG CGACGCGCCG CGAGGCCGCC
AGGGCCCGCC GCGACGCCGC ACGCGGCGCG CCGGCGCCCG CCCCGCTGCA CGCCACCTAC
AACAACGCAG GTAATCAGGG AGGAGAACAA TCATGA
|
|---|
| Protein sequence | MRDFTNKVAA ITGAGSGMGR ALAVQLARAG CHVSLADKNG VGLAETERIV RAIAPNVRVS
TRVLDVGDRD AMFAWADDTA KEHGKVNLIF NNAGVALSST IEGMEYSDLE WIVNINFWGV
VHGTKAFLPH LKASGDGHVI NTSSLFGIFA QPGMSGYNAT KFAVRGFTES LRQELDMMKC
GVSATCVHPG GIRTNIAQAS RVSKNMVGFM VASEQQGRDT FEKFFITTAD DAARTILAGV
RRNKRRVLIG RDAKAGDWMA RILPSAYQAL VVLATRREAA RARRDAARGA PAPAPLHATY
NNAGNQGGEQ S
|
|---|
| |