| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3908 |
|---|
| Symbol | |
|---|
| ID | 6181000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 911102 |
|---|
| End bp | 911995 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641683680 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001810591 |
|---|
| Protein GI | 172062940 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.761684 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.369253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCGGC TACTGGAGAA ACTTGCGCCC AACGAGGGTT ACACCCAGTC GGCGCTCGAC
AGCGTGCGGC TGATGCGATC GGATCGCCCG CTCGGGCGGA CGCCCGTGTT GTACGAGCCG
AGCATCGTGA TCGTTTGCCA GGGGCGCAAG CTTGGATTCC TGGGAAACGA GGTCTACGTT
TACGATGCGC AGCACTATCT CGTGCTGTCC GTCCCGCTAC CGTTCTCGAC GGAAACGCAG
GCCTCGCCAG ACGAGCCGAT GCTTGCCGTA TCAATCCGGC TGGACCTGCT CGAACTGAGC
GAACTGATCG CGCAGATCGG TGCGGCCAGG CAGCATCCCA AAGCGGCGCC AGCGGGTATC
GTCTCCACAC CGCTGGACGG CAACCTCGCG GGCGCGACAA TACGGTTGCT GGAAGCGTTG
ACAGAGCCGC TCGATGCACA GGTACTCGGG CCGGCGATCG TGCGCGAAAT CTGCTATCGC
GTACTCACTG GCGAGCAGGG AGCGGCAATG CGTGCCGCGC TGGCACATCA CGGCCGCTTC
GGACGCGTGG CGCGGGCACT CAAGCGGATC CACACCGAAT ATGCGGAGCC GCTCAATGTC
GCGCGTCTTG CCGAGGAAGC GGGCATGAGC GTTCCTGCGT TTCATGCCAA CTTCCGTACC
GTGACCCAGA CATCGCCGAT CCAGTACATC AAGTCCACCC GCCTTCATCA GGCGCGCCTC
ATGATGATCC GTGATGGTGT GACTGCGGCG GCGGCAGCCG GACGAGTTGG GTACGAAAGC
GCGTCCCAGT TCAGCCGGGA GTTCAAGCGC CTGTTTGGGC GGACACCGGT CGAGGAAGTG
CGCGACATGC GCGAATCATT CACGCTCTCG CCGGCGGTCC GCTTCGGGAC GTAG
|
|---|
| Protein sequence | MVRLLEKLAP NEGYTQSALD SVRLMRSDRP LGRTPVLYEP SIVIVCQGRK LGFLGNEVYV
YDAQHYLVLS VPLPFSTETQ ASPDEPMLAV SIRLDLLELS ELIAQIGAAR QHPKAAPAGI
VSTPLDGNLA GATIRLLEAL TEPLDAQVLG PAIVREICYR VLTGEQGAAM RAALAHHGRF
GRVARALKRI HTEYAEPLNV ARLAEEAGMS VPAFHANFRT VTQTSPIQYI KSTRLHQARL
MMIRDGVTAA AAAGRVGYES ASQFSREFKR LFGRTPVEEV RDMRESFTLS PAVRFGT
|
|---|
| |