| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3469 |
|---|
| Symbol | |
|---|
| ID | 6180895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 390676 |
|---|
| End bp | 392580 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641683238 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001810152 |
|---|
| Protein GI | 172062501 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.632167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGCGTT TTCCGTTCCG ATCGACCGGC CGCCTGCCGG GCGCCGCCGC CGTGTTCGCG
GTGGCCGTCG CCGCCGTCGC GCTCGCGCGT CCCGCGTTGG CCGATTCGGG TGACGAAGCG
CCCGTCACGC TCGTCAGCGA TGTCCACGTA TTCGTGATCC AGCGCGACGG CTCGCTCGAC
GAGGAAGACG ATTCGACACT GCGCGCGAAC GATGCGAACG GGATCGACGC GATCGCGCAG
CGCTACGTCT GGTTCGACAA GAACCTGGAG AAGGTCGACC TGGTGGCGGC CGAAACGATC
GATCGCGGCG GCGTCGCGCA TCCGGTCGGG CCCGACGGCA TCCGCGACGT CCAGGAGCCG
CGTTCGGCCG GTGCGCCAAC CTTCCAGGAC GGCTTGCTGC GCACCGTCGT GTTTCCCGGC
GTCGAGGCCG GGTCGAGCAC GCGCATCGCG TTCCGCAAGG CGCGTACGAA GCCCGTCAAC
GCCGGTTACT TTGGCTACTA CGTCGAACCG TCGCGCGAGC CGGTGGAGAA CCAGCGGCTG
ATCTTCGACG TGCCGGCGGA CATGCCGCTG CATGCGGACG CGCGCGGCTA CGTCGCGCTG
CCACCGGTCA CGGCGAACGG CCGCACGCGC TACGAGTTCG CATACCGGCA CGGCCCGTAC
GACCGCATCG AGAGCGGCTC GGTCGGCTAC CCGACCTACG GCGACCGCCT CGTGGTGTCG
ACGCTGCCCG ACTATGCGGC GTTCGCCACG CGCTACCGCA ACGCGGCCGT CGACGCTGGC
GCGAACGATC CGGCCGTCGT GCAACTGGCG CGCGCGCTCA CCGCCGACGT CGCCGATCCG
CACGACAAGG CGCGCCGCCT GTACGACTGG GTGCAGGCGA ACGTGCGTTA CGTCGCGATT
TTTCTCGGCG AGACGGCCGC CGCGCCGCAT CGCGTGACGG ACATCCTGCG CAACCGCTAC
GGCGACTGCA AGGACCACGT CGCGCTGTTC GGCGCGTTGC TCGCGGCGGT CGGCATCCGC
AGCGAACCGG TGCTGATCAA CCTCGGCTCC GTATACGCGC TGCCCTCCGT GCCCGGCTAC
GGCGCGGGCG CGATCAATCA CGCGATCACG TGGCTGCCCG GCCTCGGCCT CTACGCGGAC
ACCACGACGA GCGGCATCGC GTTCGGCTAT CTGCCGCCGA TCGTGATGGA CCGGCCGGCG
CTGCTCGTCG ACACCGGCGT GCTGTCGCGC ACGCCGGCCA CGCAGCCGAA GCGCCGCACC
GCGCGCGTGG AGATCGATGC GGCGCAGCCG GGCGCCGCGC GGTTTCACGC GCTCGTCGAG
GACGACGGCT GGACCGCGGA GCTCGAACGC ACGCTGTTTC GCCGCGCGCC GCCCGAGCGC
GTGCGGCAGC TCGCGAACGA ACGGCTGCGG CAAAGCGGCT TGCGGGGCCG CGCACGGATC
TCGACCGGCG ATCGCCGCGC GACGGACGGG CCGTTCGACG TGACGTACGA CGGCACGCTC
GATCACGTCG TGTGGCCGGA CGGCACGACC GCCGTGCCCG CGCTGTCGAG CATCACGGGC
GGCATCGCGA CGCAGGTCGA GGGGTGGCTG GCCGAACCGG TGCGCACGCA GCCGTGGGTG
TGTCTCGGCG GCACGTTCGT CGAGACCGGC GAGATCGCGC TGCCGGCTGG CGTCGCAGTG
ACGGACCTGC CGACCGATAC GGTCGTGCAC GACCGCTTCG TCGACTTCAC GTCGCATTAC
GTGTTCGATG TGGCCGCGCA CGTCGTGCAG GTCACGCGCC GGCTGACGGC GACATTCGGC
CGGCAGGTCT GCACGCCCGA CGAATTCACG GCGCTGCGCG CATCGCTCGA ACGTATCGAG
CGCGACACGC AGGCGCAGAT CGTCGTGCGG GCAAGGCAAC GTTGA
|
|---|
| Protein sequence | MVRFPFRSTG RLPGAAAVFA VAVAAVALAR PALADSGDEA PVTLVSDVHV FVIQRDGSLD
EEDDSTLRAN DANGIDAIAQ RYVWFDKNLE KVDLVAAETI DRGGVAHPVG PDGIRDVQEP
RSAGAPTFQD GLLRTVVFPG VEAGSSTRIA FRKARTKPVN AGYFGYYVEP SREPVENQRL
IFDVPADMPL HADARGYVAL PPVTANGRTR YEFAYRHGPY DRIESGSVGY PTYGDRLVVS
TLPDYAAFAT RYRNAAVDAG ANDPAVVQLA RALTADVADP HDKARRLYDW VQANVRYVAI
FLGETAAAPH RVTDILRNRY GDCKDHVALF GALLAAVGIR SEPVLINLGS VYALPSVPGY
GAGAINHAIT WLPGLGLYAD TTTSGIAFGY LPPIVMDRPA LLVDTGVLSR TPATQPKRRT
ARVEIDAAQP GAARFHALVE DDGWTAELER TLFRRAPPER VRQLANERLR QSGLRGRARI
STGDRRATDG PFDVTYDGTL DHVVWPDGTT AVPALSSITG GIATQVEGWL AEPVRTQPWV
CLGGTFVETG EIALPAGVAV TDLPTDTVVH DRFVDFTSHY VFDVAAHVVQ VTRRLTATFG
RQVCTPDEFT ALRASLERIE RDTQAQIVVR ARQR
|
|---|
| |