Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3378 |
Symbol | |
ID | 6179168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 296273 |
End bp | 297145 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641683147 |
Product | intradiol ring-cleavage dioxygenase |
Protein accession | YP_001810061 |
Protein GI | 172062410 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.49834 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACGAATG AACATCATGA CGGCGATACC CGGCTGACCG AGCAGGTCGT CGCCAGCTTC GACGGTACGC CGAACCCGCG CTTGCGCGTG CTGATGCAGA GCCTCGTGCG GCACCTGCAT GCGTTTGTCC GCGAAACGGA GCTGACCGAG GCCGAGTGGA TGACCGCGAT CCGCTTCCTG ACCGAAACCG GGCAGATGTG CGACGACGTC GTGCGCCAGG AATTCATCCT GTTGTCGGAC ACGCTGGGCG TGTCGATGCT GGTCGATGCG ATCAACCACC GTTTCGCCAC CGGCGCGACG GAAACGACCG TGTTCGGGCC GTTCTACATC GAGGGCATGC CCGAGCGTGC GTACGGCGAG AACATGGCGT TCACGCCCGG CACGCCCGTC GTCGTGCACG GCCGCGTGCT CGCCACCGAC GGTGCGCCGG TGCCGGGCGC CGTGCTCGAC GTGTGGCAGA CCGCCGACAA CGGCATGTAT TCCGGGCAGG ACAACGCACA GCCGCACGGC AATCTGCGCG GCCGCTACCG GACCGATGCC GAAGGCCGTT ATGCGATTAC GACGATCCTG CCGGTCAGCT ATCCGATTCC GACCGACGGC CCGGTCGGCA AGATGCTCGA TGCCACCGGA CGCCATCCGT GGCGGCCCGC GCACCTGCAC TTCATGATCG ATGCGCCGGG CTACCGCAAG CTCGTCACGC ATCTGTTCGA CGAGGAGGAC GCGTATCTGG AGTCGGATGC CGTGTTCGGC GTGAAGCCGT CGCTGATGGT CGCCTATCGG CCGCGTGCGG CGGGCGATGA ACTTGCACGC CGGTTCGGGT TGAGCGGCGC GTACCGCGAA GCGACGTATG ACTTCGTGCT CGACCGGAGC TGA
|
Protein sequence | MTNEHHDGDT RLTEQVVASF DGTPNPRLRV LMQSLVRHLH AFVRETELTE AEWMTAIRFL TETGQMCDDV VRQEFILLSD TLGVSMLVDA INHRFATGAT ETTVFGPFYI EGMPERAYGE NMAFTPGTPV VVHGRVLATD GAPVPGAVLD VWQTADNGMY SGQDNAQPHG NLRGRYRTDA EGRYAITTIL PVSYPIPTDG PVGKMLDATG RHPWRPAHLH FMIDAPGYRK LVTHLFDEED AYLESDAVFG VKPSLMVAYR PRAAGDELAR RFGLSGAYRE ATYDFVLDRS
|
| |