| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3030 |
|---|
| Symbol | |
|---|
| ID | 6178974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3361619 |
|---|
| End bp | 3362323 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641682806 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001809722 |
|---|
| Protein GI | 172062070 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGG ACAGTTCAGG CGCCGCGTTG CGCGCGTCGC TTCAAGAGAC CGTACTGCAT
ATCGCGCTGC TCGCGCAGGG TGCGTCGATG CCGGAAGTCC ACGCCTGGCG CGCGCGCTGT
ATCGGGCTCG TCGAGCGGCT CGAGCAGGCG ATGCGCGACG ACGGCCGGGC AAGCGATGTC
GTGCGCGACG TCGGCATCGC GCAATGCATG TTGCTGGACG AGGTGACGTT GCGCCACCTG
CCGGCGGTCA GGCGCGACGA GTGGTTGCGC GAGACGCTGC TGTTCCGCTT TCATCGCGCA
CACAGCGGCG CGGCGCGACC CTGCGCGCAA ATCGACGCGT TGCTGAACGG TGCGGGTTCG
GAAGCGGCGT TGCTGAATAT GTATACGGCG CTGCTAGGGC TTGGGTCGTC GCAGGAACGC
GACGCGCTTC GGGCGTGTCT GAGCACCCCG TGTCCCGGGA CATCGCCGGC AGAAACGCGC
GGGGCCGACG CGGCGAATCC GCCGGCGCAG CCATCATCGT GGTTTGCGAG TTCGGTTGCC
GCTGTCGCGG CGCGTGCATG GGGGCCGCTT CGGCCGGTGT TGTTGGCAAT GGTAGTGCTG
ACGGCAGTGT GGATCTTCTG CGACGTCTCG TTGTGGCGTG CGGTGGAGCG CTTGCCCGAC
TCGGGCCCGC GCGTTGCGCA GAACGGCGAC GGAGGGCGCC AATGA
|
|---|
| Protein sequence | MTLDSSGAAL RASLQETVLH IALLAQGASM PEVHAWRARC IGLVERLEQA MRDDGRASDV
VRDVGIAQCM LLDEVTLRHL PAVRRDEWLR ETLLFRFHRA HSGAARPCAQ IDALLNGAGS
EAALLNMYTA LLGLGSSQER DALRACLSTP CPGTSPAETR GADAANPPAQ PSSWFASSVA
AVAARAWGPL RPVLLAMVVL TAVWIFCDVS LWRAVERLPD SGPRVAQNGD GGRQ
|
|---|
| |