| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2673 |
|---|
| Symbol | |
|---|
| ID | 6178988 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2969407 |
|---|
| End bp | 2971107 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641682449 |
|---|
| Product | L-lactate transport |
|---|
| Protein accession | YP_001809366 |
|---|
| Protein GI | 172061714 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1620] L-lactate permease |
|---|
| TIGRFAM ID | [TIGR00795] L-lactate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.750265 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTTT GGCATCAGAT CTACACGCCG CTCGGCAGCC TCGGGCTGTC GGCGTTCGTC
GCCGCAATTC CGATCATCTT CTTTTTCATC GCGCTCGCCG CCTTGCGGAT GAAGGGGCAC
GTGGCCGCCG CGATCACCCT GCTGCTGTCG CTCGGCGTCG CGATCGTCGC GTACGGGATG
CCCGTGCCGC AGGCGCTCGC GGCGGCCGGC TTCGGCTTCG CGTACGGCCT GTGGCCGATC
GCGTGGATCA TCGTCGCGGC CGTGTTCCTG TACAAGATCG TCGTGAAGAC CGGCCAGTTC
GACATCATCC GCGCATCGGT GTTGTCGATC ACCGACGACC AGCGGCTGCA GATGCTGCTG
ATCGGTTTCT CGTTCGGCGC GTTTCTCGAA GGCGCCGCCG GCTTCGGCGC GCCCGTCGCG
ATCACGGCCG CGCTGCTCGT CGGCCTCGGC TTCAAGCCGC TGCACGCGGC CGGACTGTGT
CTGATTGCAA ACACCGCGCC GGTCGCGTTC GGCGCGATGG GCATTCCGAT CATCGTCGCC
GGGCAGGTAA CGGGCATCGA CCCGCTCCAC ATCGGCGCGA TGGCCGGCCG CCAGTTGCCG
CTGCTGTCGC TCGCGGTGCC GTTCTGGCTC GTGTTCATGA TGGACGGGCT GCGCGGCGTG
CGCCAGACGT GGCCGGCCGC GCTCGTCGCG GGCGGCAGCT TCGCGATCAC GCAGTACTTC
ACGTCGAACC ACATCGGGCC CGAGCTGCCG GACATCACGT CGTCGCTCGT CAGCCTCGTG
TCGCTGGCCG TGTTCCTGAA GGTCTGGCAG CCGAGCAGCG CGAAGCAGAC GGCAGGCGGC
GTCGTCGCGT CCGGCGGCGG CGCGGCGCTC GCGGGGTTCG GCGCGGGCGG CAACGGGTCG
GGCGCAAGCC GCCAGGCGTC GCCGTACACG CTCGCGCAGA CCGTGCGCGC GTGGTCGCCG
TTCCTGATCC TGACGGCCGT CGTCACCGTA TGGAGCATCG CGCCGTTCAA GGCGCTGTTC
GCCGCGCACG GCGCGCTCGC GTCGACCGTC CTGAAGTTCC ATGTGGCCGG GCTCGACCAG
CTAGTCGTGA AGACCGCGCC GATCGCCGCG ACGCCGAAGG CACTCGACGC GGTGCTGAAG
CTCGACCTCG TGTCGGCGGT GGGCAGCGCG ATCCTCGTGA CCGCGCTGAT CTCGATGGCG
CTGCTGCGGA TGAAGCCGCG CGACGCGCTC GTCACGTTCG GCGAGACGCT GAAGGAACTC
ACGCGCCCGA TCCTGTCGAT CGGCCTCGTG CTCGCGTTCG CGTTCGTCGC GAATTACTCG
GGGATGTCGT CGACGCTCGC GCTGATGCTG GCCGGCACCG GCGCCGCGTT CCCGTTCTTC
TCGCCGTTCC TCGGCTGGCT CGGCGTGTTC CTGACCGGCT CGGACACGTC GTCGAACGCG
CTGTTCTGCT CGCTGCAGCA GGCAACCGCG CACCAGCTCG GCGTGCCCGA GACGCTCGCG
GTCGCCGCGA ACACGACGGG GGGCGTGACC GCGAAGATGA TCTCGCCGCA GTCGATCGCG
GTGGCATGCG CGGCGACCGG CCTCGTCGGC AAGGAATCCG ATCTGTTCCG CTTCACGGTG
CGCCACAGCC TGCTGTTCGC GGTGATCGTC GGTGTGATCA CGCTCGTGCA GGCCTACGTG
CTGCCGGGAA TGGTGCCGTA A
|
|---|
| Protein sequence | MQVWHQIYTP LGSLGLSAFV AAIPIIFFFI ALAALRMKGH VAAAITLLLS LGVAIVAYGM
PVPQALAAAG FGFAYGLWPI AWIIVAAVFL YKIVVKTGQF DIIRASVLSI TDDQRLQMLL
IGFSFGAFLE GAAGFGAPVA ITAALLVGLG FKPLHAAGLC LIANTAPVAF GAMGIPIIVA
GQVTGIDPLH IGAMAGRQLP LLSLAVPFWL VFMMDGLRGV RQTWPAALVA GGSFAITQYF
TSNHIGPELP DITSSLVSLV SLAVFLKVWQ PSSAKQTAGG VVASGGGAAL AGFGAGGNGS
GASRQASPYT LAQTVRAWSP FLILTAVVTV WSIAPFKALF AAHGALASTV LKFHVAGLDQ
LVVKTAPIAA TPKALDAVLK LDLVSAVGSA ILVTALISMA LLRMKPRDAL VTFGETLKEL
TRPILSIGLV LAFAFVANYS GMSSTLALML AGTGAAFPFF SPFLGWLGVF LTGSDTSSNA
LFCSLQQATA HQLGVPETLA VAANTTGGVT AKMISPQSIA VACAATGLVG KESDLFRFTV
RHSLLFAVIV GVITLVQAYV LPGMVP
|
|---|
| |