| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1337 |
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| Symbol | |
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| ID | 6177582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1481988 |
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| End bp | 1482734 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641681092 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001808041 |
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| Protein GI | 172060389 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.378694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGC TGACAGGCAA GGTTGCGATC GTCACGGGCG GGTCCAAGGG CATCGGCGCC
GCGATCGCAA AGGCGCTGGC CGCCGAAGGC GCGTCGGTCG TCGTGAACTA CGCGAGCAGC
AAGGCCGGTG CCGACACCGT GGTGAGCGCG ATCGTCGAAG CGGGCGGCCG CGCGGTCGCG
GTGGGCGGCG ACGTGTCGAA GGCAGCGGAC GCGCAGCGCA TCGTCGATGC CGCGATCGAG
AACTATGGCC GTCTCGACGT GCTGGTGAAC AATTCCGGTG TCTACGAATT CTCGCCGATC
GAGGCGATCA CCGAAGAGCA CTATCGCCGG CAGTTCGATA CGAACGTGTT CGGCGTGCTG
CTGACGACGC AGGCCGCCGT CAAGCATCTC GGCGAAGGCG CGAGCATCAT CAACATCAGC
TCGGTCGTGA CGAGCATCAC GCCGCCCGCG AGCGCCGTGT ACAGCGGCAC CAAGGGCGCC
GTCGACGCGA TCACCGGCGT GCTCGCGCTC GAGCTCGGCC CGCGCAAGAT TCGCGTGAAC
GCGATCAACC CGGGGATGAT CGTGACCGAA GGCACGCACA GCGCGGGCAT CATCGGTTCG
GATCTCGAAA CGCAAGTGCG CAGCCAGACG CCGCTCGGCC GCCTCGGCGA GCCGGACGAC
ATCGCGTCGG TCGCCGTGTT CCTCGCGTCG GACGATGCGC GCTGGCTGAC CGGCGAGCGC
CTCGTCGCGA GCGGCGGGCT GCACTGA
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| Protein sequence | MSKLTGKVAI VTGGSKGIGA AIAKALAAEG ASVVVNYASS KAGADTVVSA IVEAGGRAVA
VGGDVSKAAD AQRIVDAAIE NYGRLDVLVN NSGVYEFSPI EAITEEHYRR QFDTNVFGVL
LTTQAAVKHL GEGASIINIS SVVTSITPPA SAVYSGTKGA VDAITGVLAL ELGPRKIRVN
AINPGMIVTE GTHSAGIIGS DLETQVRSQT PLGRLGEPDD IASVAVFLAS DDARWLTGER
LVASGGLH
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