| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0118 |
|---|
| Symbol | |
|---|
| ID | 6176575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 137651 |
|---|
| End bp | 138319 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641679853 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001806836 |
|---|
| Protein GI | 172059184 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGC GACATGTTCA GGTTCCGGCG CCGCCCGGCC AGCCGGCGGC GCAACCCGCG
CCCGCGTTGC GCCGCCGACC GCGCCAGTCG CGCGCGCAGG CCACGTCCGA CGCGCTCCTG
CAGGCCTTCG TTCAGCTTTT GCTCGAGCGC GGCTACGCGA AGGCGACGAT CCGCGAGATC
GCGGCCGTCG CGGGCGTGAG CATCGGCACC TTCTACGAAT ACTTCGGCGA CAAGCAGAGC
CTCGCCGCGC TGTGTATCCA CCGGCACGTG CAGGCGCTGG CCGACCGGCT GCGCGACGCG
GCGCACGGCT TGGCCGGCGT GCCGCGCGCC GAACTCGCGG CCGCGCTGGT GGATGTGCAG
GTCGACGCGA TCGGCGCCGA CGCCGCGCTG TGGAGCGCTT TCTTCGCGCT GGAGCGGCAG
GTGTCGCCGC TCGCTGCGTA CCGCCGGCAT TACGACGCGT ATGTCGCGCT GTGGCGCGAC
GCGTTCGCGC AGGCCGCCGA TCCGCCGCCG GCCGCGCGGC TCGACGGGAT CGCACGGATG
GCGCATACGA TCTGCTACGG CGGCGTGTCG CAGGCGCTGC TCACGCTCGG GCCCTCGCTC
GATTTCGCCG CATTGCGCAA TGAGCTTCAG GCCGTGCTGC GCGCCTATCT GGCGGCAGCG
GGCGAGTGA
|
|---|
| Protein sequence | MPPRHVQVPA PPGQPAAQPA PALRRRPRQS RAQATSDALL QAFVQLLLER GYAKATIREI
AAVAGVSIGT FYEYFGDKQS LAALCIHRHV QALADRLRDA AHGLAGVPRA ELAAALVDVQ
VDAIGADAAL WSAFFALERQ VSPLAAYRRH YDAYVALWRD AFAQAADPPP AARLDGIARM
AHTICYGGVS QALLTLGPSL DFAALRNELQ AVLRAYLAAA GE
|
|---|
| |