Gene BURPS1106A_A1142 details

Gene Information

• Locus tag: BURPS1106A_A1142
• Symbol: colA
• ID: 4905947
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: +
• Start bp: 1095475
• End bp: 1097418
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 640144248
• Product: collagenase
• Protein accession: YP_001075177
• Protein GI: 126455591
• TIGRFAM ID: [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAATGA CGGAGGTGTT CCGAAAAACC CGCCGCTGGT CCGCCGTGGC GGCGCTATCG 
GCATTCGTGG GGCTGGCCGG CGCCGCGTCG GCCAATACGC AGCCGATGCA ACCGACGCAG 
CAAAAGCAGG CGCGCATGCC GCGCCTGCCG CAGAACCTGC CGGTTTCGCC CGAGCAGGCC 
GAATACAACC TGCCGCTCAG CGAGCAGGAT CGTGCGGCGC TCACCAGGCC TTCGCCGCTC 
AAGCAGCCGG CCAAGCGCGG CAAACGCAGC GCGCCGGGCG CCGATTGCCG CGACATGTCG 
GTGATGACTC AGTATCGCGG CGCCGCGCTC GCCGATTACA TCGCGAATCT TCCCGATTAT 
GAATGCCATT ACGGCCTGTT CTCGGTCGAT AAAACCCTGG CTGCGCAGAT TTTCAGTGCG 
GAAAATGTGT ATGCCGTCGC GAGCCGTTTC GTGCAGGATA TCTATCGCTA TGATGCGAGC 
AACTTGATTC TGGTCAATTT ACTGATTTAT CTGCGTTCCG CTTATTACCA ATATGATGTA 
TCGGGCATTG CCAATCCGAT TCCGAATCTC GCGGTATGGC TGCGCCCGTA TATCAAGCAG 
AGCCTGGAGG GCGCCGCGCT CTATCGAGAG AACGCGCGCG CGCCGAGCAC CGCGAACGAG 
CTGATGAAGC TCATCACGAA CATGAAGGAC GAGGCGTTCT ATCTGCCCAC GCTGAAGGCG 
CGCATTGCGT TCTACACGGC GAGCGCGACG AATCCGCAGG CGGCGGCGCC GCTGTTGCAG 
CCGAGCGCGG CGGGCGGCTT CACCGGCCTG CTCACGGTGT TCTTCTATGC GCATCAGCGC 
AGCGGCGCGC AGCCGATGCT CGATAGCGAC GCGACGCTGC CCGAGACGCT CAATCGCTTC 
GTCACCGCGA ACCGCGCGAG CCTGTCGAAC ACGAGCGCCG CGTACCAGCT CGCGGACGCG 
GCGCGCGAAA CGTTTCGCTT CCTGCGCTAC CCGGCGCAGA AGCCGCGCGT GAAGAAGATG 
ATCCAGGACA TGCTCGCGTC GACGAGCATG ACGGGCGCGG ACAGCGACCT GTGGCTCGCG 
GCGGCGGAAG CGGTCGACTA TGGCGATCCG GGCAACTGCG CGGACTACGG CACGTGCGAC 
TACAAGAAGC GGCTCACCGA TGCGGTGCTC ACGCATCGTT ACGCGTGCAA CGCGGGCGTG 
CGCATTCTCG CGCAGGACAT GACGCTGCCG CAGTTGCAGT CGGTCTGCAC GTCGGTCGCG 
CAGCAGGACG ACTACTTCCA CCGGATGATG AAGACCGGGC GCAAGCCGGT GGCGGGCGAC 
CGCAACGATA CGATCGAGCT CGTCATCTTC GACGACTACG CGAACTATCG AAAATATGCT 
TCGGTGATCT ACGGCATCAG CACCGACAAC GGCGGCATGT ATCTCGAAGG CGATCCGTCC 
GCGCCCGGCA ACCAGGCGCG CTTCATTGCG CACGAGGCGT CGTGGTTGCG GCCCGAGTTC 
AAGGTCTGGA ACCTCGAGCA CGAGTTCACG CACTATCTCG ACGGCCGCTA CGACATGGCG 
GGCGATTTCG CGGCGAGCAC CGCGAAGCCG ACCGTCTGGT GGATCGAGGG TCTCGCCGAA 
TATCTGTCGA GAAAGAACGA CAATCAGGAG TCGATCGATG CGGCGCGCAC GGGCGCGTAC 
CGCTTCTCGG ACGTGCTCGG CACGCTGTAT TCGTCGAGCG ACTACGTCGC GCGCGCCTAC 
CGTTGGGGCT ACATGGCGAC ACGCTTCATG TTCGAGCGCC ATCGCGCGGA CGTGGATACG 
ATCGTGTCGC GCTTCCGGGT GGGCGACTAC GACGGCTACG CGAACTATGT CGCGTACATC 
GGTAACCGCT ACGACGGCGA GTTCGTCGAT TGGGCGCGCG CGGCGACCAC GGCGGGCGAG 
CCGCCGCTGC CGACGAAGCG TTGA 

 

Protein sequence

MPMTEVFRKT RRWSAVAALS AFVGLAGAAS ANTQPMQPTQ QKQARMPRLP QNLPVSPEQA 
EYNLPLSEQD RAALTRPSPL KQPAKRGKRS APGADCRDMS VMTQYRGAAL ADYIANLPDY 
ECHYGLFSVD KTLAAQIFSA ENVYAVASRF VQDIYRYDAS NLILVNLLIY LRSAYYQYDV 
SGIANPIPNL AVWLRPYIKQ SLEGAALYRE NARAPSTANE LMKLITNMKD EAFYLPTLKA 
RIAFYTASAT NPQAAAPLLQ PSAAGGFTGL LTVFFYAHQR SGAQPMLDSD ATLPETLNRF 
VTANRASLSN TSAAYQLADA ARETFRFLRY PAQKPRVKKM IQDMLASTSM TGADSDLWLA 
AAEAVDYGDP GNCADYGTCD YKKRLTDAVL THRYACNAGV RILAQDMTLP QLQSVCTSVA 
QQDDYFHRMM KTGRKPVAGD RNDTIELVIF DDYANYRKYA SVIYGISTDN GGMYLEGDPS 
APGNQARFIA HEASWLRPEF KVWNLEHEFT HYLDGRYDMA GDFAASTAKP TVWWIEGLAE 
YLSRKNDNQE SIDAARTGAY RFSDVLGTLY SSSDYVARAY RWGYMATRFM FERHRADVDT 
IVSRFRVGDY DGYANYVAYI GNRYDGEFVD WARAATTAGE PPLPTKR