Gene BURPS1106A_A0248 details

Gene Information

• Locus tag: BURPS1106A_A0248
• ID: 4904238
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009078
• Strand: +
• Start bp: 237112
• End bp: 239001
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 640143355
• Product: hypothetical protein
• Protein accession: YP_001074291
• Protein GI: 126456248
• COG category: [S] Function unknown
• COG ID: [COG3519] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03359] type VI secretion protein, VC_A0110 family

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.195866
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACCCGC AATTGCTCAA CTACTACAAC CAGGAACTGA TCTACATGCG CGAGCTCGGC 
GCCGAGTTCG CGCGCGCGCA CCCGAAGATT GCGCGGCGCC TCGGAATGCA GGCGGGCGAA 
GTGGCCGATC CGTACGTCGA GCGGCTGATC GAATCGTTCT GCTTCATGGC CGCGCGCATG 
CAGATCAAGC TCGATGCGGA ATTTCCGCGC TTCACCGGCC GCCTGCTCGA GGTGCTCTAT 
CCGAACTATG TCGCGCCGAC GCCGTCGATG GCGGTCGCGC GCCTGTACCC GAGCCGCACC 
GAAGGCAACC TCGCGCAAGG CTTTCGCGTC GCGCGCGGCA CCGCGTTTGC CGCGCGCGTG 
CCGGCCGGCG AGAAAACCGC GTGCCGGTTT CGCAGCGGCC AGGACGTGAC GCTCTATCCG 
CTCGAGATCG CCGACGCGCG GCTGACGGGG ATTCCGCCGG ACATCCCGGC GCTCGACCGC 
TACGTGCCGG CCGGCGCGCA GGTGCGCGGC GCGCTGCGCC TGCGGCTGCG CACGACCGGC 
AACATGCGCA TCGCCGATCT GCGGGGCCTC GACAGGCTGC CGCTGTATCT CGCGGGCGAC 
GCTCAGGTGG CCTCGCACCT GTTCGAGCTG CTGCACGTGG CCGGCGTCGC GACGCTCACG 
GCCGCGCCCG GCGAGTTCGC CGCGCCGGGC CGCCCGCCCG CGGCGGTTAC CGTCGACGCG 
CTCGCTCACG AAGGGCTCGG CGCCGACGAG GGGCTGTTGC CGCTCACGTG GGCGAAGTTC 
CATGGGCACA ACCTGCTGCA CGAATACTTC GCGTGCCCGG AGCGCTTCTA TTTCGTCGCG 
CTGACGGGGC TCGAGGAAGG GTTGCGGCGC ATCGCGGGCA GCGAGGTCGA AATCGTCGTG 
CTGCTCGAAC AATCGCCCGA GCGGCTCGCG GACGTCGTCG ACGCGTCGCG CTTCGCGCTG 
TTCTGCACGC CGGTGATCAA CCTGTTTCCG CGCCACATGG ACCGGATCGA ACTGTCGAGC 
GGGCAGACCG AATGCCATCT GGTGCCGGCC CGCCTCGCGC CGCTCGACTA CGAAGTATTT 
TCCGTCGAGG CGATGTACGG GCAGGTCGCC GCGACATCGG CCGAACTCGA GTTCCGGCCG 
CTGTACCAGA CGCTGAACGA CGACGAGAGC AACTATGGAC GCTATTTCTC GACGCGGCGC 
GAGCGCCGGC TCGTGTCGGA TTTCGCGCGC CGCTACGGCA CGCGCACGCC GTACGTCGGC 
ACGGAGATGT TCGTATCGCT CGTCGATCAG AACGAGGCGC CCTACAGCGA GGACATCCGC 
TATCTGTCGG TGGACGCGCT GGTGACGAAC CGCGACCTGC CGAGCCTCGT GCCGCGCGAC 
GGCGTGCGCG ACCTCACGGC GATCGAATCC GCGCCGATCG ACAGCGTCGG CCTGATCCGC 
GCGCCGTCCG CGCCGAAGGC GCCGTATGCG GAGCGCGAGA TCGCGTGGCG GCTGATCCGC 
CAGTTGAACT TCAACTATCT GCCGCTCGAC GAGCTCGACC ATCGCGCGGG CGGACAGGGC 
CTGCGCGGCC TGCTGCGGCT GTTTCTGGCG GGCGACGAGG CCGACAGCCG GCGGCAGGTG 
GAAAGCCTTG TCGGCGTGAA GACGCGGCCC GTCACGCGCA AGCTGCCCGG CGCGGGCCCG 
CTCGTGTTCG GGCGCGGCGT CGAGTGCGCG CTGAGCGTCG ACGAAACGGG CTTCTCCGGT 
GTGAGCCCGT ATCTGTTCGG GCTCGTGCTC GAGCATTATC TGGCGCGGCA CGTGTCGATC 
AACGTGTTCA CGCAGACCGA GCTGAACTCG ATCCAGCGCG GCCGCATCGC GCGCTGGCCG 
GTGCGCATGG GCGCGCGGGG AGGCGCGTGA 

 

Protein sequence

MDPQLLNYYN QELIYMRELG AEFARAHPKI ARRLGMQAGE VADPYVERLI ESFCFMAARM 
QIKLDAEFPR FTGRLLEVLY PNYVAPTPSM AVARLYPSRT EGNLAQGFRV ARGTAFAARV 
PAGEKTACRF RSGQDVTLYP LEIADARLTG IPPDIPALDR YVPAGAQVRG ALRLRLRTTG 
NMRIADLRGL DRLPLYLAGD AQVASHLFEL LHVAGVATLT AAPGEFAAPG RPPAAVTVDA 
LAHEGLGADE GLLPLTWAKF HGHNLLHEYF ACPERFYFVA LTGLEEGLRR IAGSEVEIVV 
LLEQSPERLA DVVDASRFAL FCTPVINLFP RHMDRIELSS GQTECHLVPA RLAPLDYEVF 
SVEAMYGQVA ATSAELEFRP LYQTLNDDES NYGRYFSTRR ERRLVSDFAR RYGTRTPYVG 
TEMFVSLVDQ NEAPYSEDIR YLSVDALVTN RDLPSLVPRD GVRDLTAIES APIDSVGLIR 
APSAPKAPYA EREIAWRLIR QLNFNYLPLD ELDHRAGGQG LRGLLRLFLA GDEADSRRQV 
ESLVGVKTRP VTRKLPGAGP LVFGRGVECA LSVDETGFSG VSPYLFGLVL EHYLARHVSI 
NVFTQTELNS IQRGRIARWP VRMGARGGA