Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_1661 |
Symbol | xynB3 |
ID | 6364555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | + |
Start bp | 1998435 |
End bp | 2001140 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642680857 |
Product | endo-1,4-beta-xylanase/Beta-xylosidase |
Protein accession | YP_001955604 |
Protein GI | 189440523 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTGAACA CGGATGTTCC GGATATCAGT GTTATTCGTG TGTCGAAGGA CGATCCGAAT AACAAAGACG GTCGTGATGT GTATTACATG GTGAGTACCA CTATGGAGCT CAGTCCCGGA TCTCCAATTA TGAAATCCTA TGATCTGGTC AATTGGTGGA TAGTCACGTA CGTGTATGAT CGCATTTCTA TGAGCGATGC TTCATCCTTG CGCAATGGAG CTAGCTCGTA TGGCGAAGGC GAGTGGGCTC CGTCGCTGCG CTATCACAAT GGCCGCTTCT ACGTGTTATT CAATACGAAC AACCTTAATG GCGCTTATAT CTACTACACC GATGATATTG AGAATGGTCC TTGGACGAAG ATTGCCCTTA ATCGGGGATT CCATGATCCG TCATTGTATT TTGATGAGCA AGGGAGTCCT TGGATTATCT CCGGCGTCAA CCAATATAGG CTGTCCGATG ATTTAACCAC GGTGGTGGAG AGCCATGAGA ATATCATCTC TGCCGAACAG TTCACTGATG ATCTTGGTGA GACTCCTACC GGATTTGAAG GATCTCAGAC TTTCAAAATC GGTGATTATT TCTATACTCC AACGATTTAC TGGGGCAAAG ACGGTCGTAC GGTGATGCTG CTGCGCACCA CTGATTTGCT TGATGGCTCC AAATACGAAG CCAAAAAGTA TTATCTAGGT GCTTTCGCAC AAGGTAGCCT TGTTGAAGTC GACAACGGTG ATGGCACGAC GTCTTGGCAT GGATTCTTCT TCCGAGACAC ATATCCGACC GGACGTATTC CCGGTTTGAT TCCTGCAACG TGGGGTGATG ACGGATGGCC TGTGTTTGGG GACAATAATC AGGTAAGCGC GTCGGACACC TACGACAAAC TGATTGATTT GCCTGCTGAT TTGGAGAATC TGGTTCGCCA GCGTTCCCTG GTCAATTCGG ACGATTTTGA TAATGACGCG CCTCATCAGT CTTATCAGGA TCAGGATTGG TGGACTCTGG AGGAGCCTCC TCAGGTTGAC GATTCTCTGA TTGGAATCGA GCTGGTGGAC AATGGCGATT TCGAAAACGG GACTGAATCG TGGACCCCTC AGTGGAATGG TACGCTTACC GCGATTACGG ATGGTTCTCT TTCTGGAACC ACGAGTCTTG CTGTGACGAA TCGTGGCGAA TACAATGGCG CTGGCCCGGG TCAATCTATG GATGGAAAAT TGCAGCAGGG CGTGACATAT CGTGCCAGTG CAACGATTCG ATACGACCAT GAGATGGACG GCGTCGATTC ATCGGCTGTG ACTTCCCACC TGTTTTATGT GGCGATTCAA TATGCAGACG GCACAATTAA TCGTGTGGCC ACAGGAACAG TGAAACGTGG GGAGACGACT ACTATCACAG GTGAGTTCTC CATCCCATCC GACGCTAATG TGGAAGGTTC CAAACTCATT GTCGAAACCG CGTGGGGTGC GGAAGGCACG TGCATGGATT ACGTCATCGA CGATATTTCC CTGATCGGTC TTGCTGATGA GAAGGAATAT CCGGTCGCCG AAGAATACCA ACCCAATGGT TCGAATCTTG ATTTGGTATG GGAATGGGGA CATAATCCAG ATAACCGATA TTGGTCTCTC ACTGATCGTG AAGGCTGGTT GCGTTTGACC AATGGGCACA AGGTTTCCGC CACGGCCAAA TATATGAAAG GCACTTATGG CGACCTGACA TATTTTGAAA CCGCCCGTAA CGTTTTGTCG CAGCGTACCT TTGGCGGATC CATGTCTGTG GAAACCCACA TGGATGTCAG TCATATGAAG GATGGAGACA CCGCAGGCCT CGCTACATAT ACCCGTAGTT TTGCCTATGC CGCTGTGCGT CAAGAAAATG GACAGCGAAC GTTGGGCGTG GTCAAGCGTG TCTACGACAA TGGCGTGAAG GACGCGGACG GTAATATCGT TGACGATACG ATTGATCGTG ACGCTGAAGA GGCCTTTGTA TCGGGCGGCA CAGTGACATT GCCAGATGAT GCGACCAATG TGTGGATCAA GTCGGACAAC ACACTGGATA ATGCGAGTGG TAAGTTGACG ATTCAGTATT GGTACAGTCT GGACGGTAAG CAATGGTCCA AGCTTGGCGA CGAGCAGGGG CCGCTGACTT ACGATTGGAG CTTGTCGCAC TTTAAGGGGT ATCGAATCGG CTTGTTCAAT TACGCCAAGG AGAATACGGG TGGTTATGTC GATTTTGATT ACTATGACTT GAGCGACGTG TTGACTTCTG ACGGCAAAGC TGTGGATACG TCTAAGCTGC GTTCGGCCAT TGATCAGGCT GACTCTCTGC AGTCTGCGGA ATATCCTATG GATGAGTGGG ATAAGATGCT CACGCTACTT GATAAGGCAA AGCAGGCGTT GGCATCCGAT CCTTCCACGC AAAATGAGGT GGATGCCCCG CAGCGTGCAC TGAGTTTGCA GCTCGCGCAA TTGGCGGTTG ACCGTCAGTC TGGTGATGGC GGAAATCCTG GTGGTGGTGA TCAGACCGGT GACGGTAACC AGTCGGGTAA CGGCGATCAG ACCGGTGATG GCGGCCAGCA ACAGTCTTCT ACTGCTGATG ATAATTCATC TGAACTGTCA TCAACTGGTT CGTCCGTAAC ACCGATGGTG CTGTCTGCAA TTGCCCTGAT GCTGGCTGGC ATCAGTGTCA TTCGGATACG CCGCTCTTCG CGCTGA
|
Protein sequence | MLNTDVPDIS VIRVSKDDPN NKDGRDVYYM VSTTMELSPG SPIMKSYDLV NWWIVTYVYD RISMSDASSL RNGASSYGEG EWAPSLRYHN GRFYVLFNTN NLNGAYIYYT DDIENGPWTK IALNRGFHDP SLYFDEQGSP WIISGVNQYR LSDDLTTVVE SHENIISAEQ FTDDLGETPT GFEGSQTFKI GDYFYTPTIY WGKDGRTVML LRTTDLLDGS KYEAKKYYLG AFAQGSLVEV DNGDGTTSWH GFFFRDTYPT GRIPGLIPAT WGDDGWPVFG DNNQVSASDT YDKLIDLPAD LENLVRQRSL VNSDDFDNDA PHQSYQDQDW WTLEEPPQVD DSLIGIELVD NGDFENGTES WTPQWNGTLT AITDGSLSGT TSLAVTNRGE YNGAGPGQSM DGKLQQGVTY RASATIRYDH EMDGVDSSAV TSHLFYVAIQ YADGTINRVA TGTVKRGETT TITGEFSIPS DANVEGSKLI VETAWGAEGT CMDYVIDDIS LIGLADEKEY PVAEEYQPNG SNLDLVWEWG HNPDNRYWSL TDREGWLRLT NGHKVSATAK YMKGTYGDLT YFETARNVLS QRTFGGSMSV ETHMDVSHMK DGDTAGLATY TRSFAYAAVR QENGQRTLGV VKRVYDNGVK DADGNIVDDT IDRDAEEAFV SGGTVTLPDD ATNVWIKSDN TLDNASGKLT IQYWYSLDGK QWSKLGDEQG PLTYDWSLSH FKGYRIGLFN YAKENTGGYV DFDYYDLSDV LTSDGKAVDT SKLRSAIDQA DSLQSAEYPM DEWDKMLTLL DKAKQALASD PSTQNEVDAP QRALSLQLAQ LAVDRQSGDG GNPGGGDQTG DGNQSGNGDQ TGDGGQQQSS TADDNSSELS STGSSVTPMV LSAIALMLAG ISVIRIRRSS R
|
| |