Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BCAH820_0059 |
Symbol | mfd |
ID | 7187981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus cereus AH820 |
Kingdom | Bacteria |
Replicon accession | NC_011773 |
Strand | + |
Start bp | 54533 |
End bp | 58063 |
Gene Length | 3531 bp |
Protein Length | 1176 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 643553463 |
Product | transcription-repair coupling factor |
Protein accession | YP_002449089 |
Protein GI | 218901255 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 200 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGGTT TATTAGAGCA GTTTTATAAA AATGAAGAGA TCCAATCGGT CATTAATGGA CTAGAAGATG GTTTAAAAGA GCAACTTGTA TCAGGTATGG CAACATCTTC TCGTTCGTTA TTAATGGCGG CCTTATATAA AAAAACAAAA AAATCACAAC TTATTGTGAC GCATAATTTA TATCAAGCAC AAAAAGTACA TGAAGATTTA GTGGCGTTAC TTGGTGAAAA AGATGTATGG CTATATCCAG TAAATGAATT GATAGCATCA GAACTTGGTG TTGCAAGCCC AGAATTGAAG GCACAACGTA TTGAAGTGTT AAATCGCTTA GCTGCAGGAG AGCACGGGAT TATTGTAGCA CCAGTTGCAG GACTACGCAG ATTTTTACCA ATGAAAGAGT TGTGGAAGCA AAGGCAAATC GAAATCAGTC TAGGGCAAGA GATTGATTTA GATACATTTT TGCATACTTT ACATCATATT GGCTATGAGC GTAAGTCTAT GGTAGAAGCT CCTGGAGAAT TTAGTTTGCG CGGGGGAATA TTAGATATTT ATCCACTAAC TGAGGAGCTA CCATTTCGTA TTGAATTTTT CGATACAGAA GTTGATTCTA TTCGGTTATT TGATGTGGAT GAACAGCGCT CTCAAGATAA AAAAGAAAGT GTTAGATTCG GTCCAGCAAC AGAGTTTCTA TTTTCACAGG AAGAATTGAA ATCGGGAATA AAGCATCTTG AAGAAGGTCT GACTAAGACG ATGCAAAAAC TTTCCGATGA TAAGTTGAAG ACTACAGTGC TTGAGACGGT CAGTCATGAA ATTGAGATGT TAAAAAACGG GCAAAGTATA GAACAGATGT TTAAATATTT ATCTATTTTC TATAACGAAC CTGCTAGTCT GATAGATTAT TTACCAGAAG ATGGTGTTGT GATTTTAGAT GAAATTTCAC GTATTCAAGA AACAGCATCT CATCTTGAAT CAGAAGAGGC GGAATGGTAT ATATCCCTTC TTGGTGAGGG AACAATTATT CAAGATTTAT CTTTCTCTCA TTCGTTTGAA GAATTTCTTC ATCATAAAAA AAGAAGTTTT GTATATTTAA CGTTATTCTT ACGTCATATA GCGCATACAC ATCCGCAAAA CATTGTGAAT GTGACATGTA AAACAATGCA AGATTTCCAT GGGCAGATGC AGTTGTTGAA AACTGAAATT GATAGATGGA ACGAAGGGCA TTTTACGACC GTTGTGCTAG GTACAGATGA TGAGCGTGTG AAAAAACTAC AACATATTTT AAGTGATTAT GATATTGATG CAGATATTGT AGAGGGCACA GATATATTAT TGCCTGGAAG GTTACAAATT GCTGTAGGTG ATTTACATGC AGGGTTTGAA ATGCCGATGC AAAAGCTTGT TGTCATTACT GAAAAAGAGC TTTTTCATAA GAAAGTTAAA AAATCACAAC GTAAGCAAAA GTTATCGAAT GCTGAACGCA TTAAAAGTTA TTCGGAATTA AAAGTTGGGG ATTATGTAGT TCATGTAAAT CATGGTATAG GTAAATTCTT AGGTATTGAG ACATTAGAGA TTAATGGTGT TCATAAAGAT TATTTGAATA TTAAATATCA AGGTAATGAT AAGTTATACG TTCCAATTGA ACAAATTGAC CAAGTGCAAA AATATGTAGG ATCTGAAGGT AAGGATCCGA AAGTTTATAA ATTGGGCGGA AACGATTGGA AAAAGGTCAA AACAAAAGTT GAAAAATCTG TACAAGACAT TGCGGATGAC CTCATTAAAC TCTATGCTGA GCGCGAAGCT TCAAAGGGTT ATGCATATAC ACCAGATACG GCAGAACAAC AAGAATTTGA GTCTTCTTTC CCGTATCAAG AGACAGAGGA TCAATTACGT TCTATTGAAG AGATTAAAAA GGATATGGAA CGCGGACGTC CGATGGATAG GCTTCTTTGT GGTGATGTAG GATATGGAAA GACGGAAGTA GCTATTCGTG CGGCGTTTAA AGCAATTATG GATGAAAAAC AAGTTGCAAT TTTAGTGCCG ACAACGATCC TTGCACAACA ACACTATGAA ACAATTCGAG AGCGTTTTCA AGATTATCCA ATCAATATAG GATTATTAAG TAGATTCCGT ACGAGAAAGC AGCAAAATGA AACAATTAAA GGTTTAAAAG ATGGCACGGT AGATATTGTA ATCGGAACGC ATCGTATTTT ATCTAAAGAT GTTACTTATA AAGATTTAGG TCTTCTTATT ATTGATGAAG AACAAAGATT TGGCGTAACA CATAAAGAAA AAATTAAACA ATTAAAAGCA AATGTTGACG TATTAACATT AACGGCAACC CCGATCCCGC GTACGCTTCA TATGTCTATG CTTGGTGTAC GTGATTTATC TGTTATTGAG ACGCCGCCGG AAAATCGTTT CCCAGTTCAA ACATATGTAG TTGAGTATAA TCCAGCGTTA ATGCGAGAGG CGATAGAACG CGAGCTTGCA AGAGGTGGGC AAGTTTACTT CCTATATAAT CGTGTGGAGG ATATCGAACG AAAAGCAGAT GAAATTTCGA TGTTAGTTCC AGATGCACGT GTCACTTATG CACATGGGAA AATGAACGAA AGTGAATTAG AGTCTGTTAT GCTATCGTTT TTAGAAGGGC AGCATGATGT TCTTGTAAGT ACAACGATTA TTGAGACAGG TGTAGATATT CCGAATGTAA ATACATTAAT TGTATTTGAT GCAGATCGTA TGGGATTATC GCAGTTGTAT CAGCTTCGTG GGCGTGTTGG ACGTTCTAAT CGTGTTGCAT ATGCTTACTT TGCATACAAA CGAGATAAAG TGTTATCAGA AGTTGCGGAG AAGCGTCTGC AAGCCATTAA GGAGTTCACA GAGCTTGGGT CTGGTTTCAA AATTGCGATG CGAGATTTAT CAATTCGTGG TGCAGGTAAC TTGTTAGGAG CTGAACAACA TGGATTTATT GATTCTGTCG GATTTGATTT ATATTCTCAA ATGTTAAAAG ACGCAATTGA ACAGCGTAGA GGAACAGACG GAGTTGAAAA TACAGTTAAT GTTGAAATTG ATTTAGAAGT AGATGCATAT TTACCAGATG CTTATATTTC GGATAGTAAA CAAAAAATTA TGATGTATAA ACAATTTAGA GGTGTTTCTG CGATTGAAGA TATTGAAGAG TTGCAGGAAG AGATGATAGA TAGATTTGGT GATTACCCGC AAGAAGTTGG TTACTTATTA CAAATTGCAA ATATTAAAGT ATTGGCAATG AAAGAACAAA TTGAATTAAT TAAGCAAAAT AAATTTGAAG TAACAATTCT GTTCTCAGAA CAAGCGAGTC AAAATATTGA TGGTGGAAAA TTATTCATGC TCGGAAATAG TTTTGGACGT ATGATCGGTT TAGGAATGGA AGGATCACAA TTGAAAATCG TCATGAAAAC AAATGGCTTA GAGACATCGA AGTGGTTAAC AATTGCTGAA AATTTATTAA AAGGCTTGCC AGATGTAAAA AAAGAAGTCA TAAATGCCTA A
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Protein sequence | MIGLLEQFYK NEEIQSVING LEDGLKEQLV SGMATSSRSL LMAALYKKTK KSQLIVTHNL YQAQKVHEDL VALLGEKDVW LYPVNELIAS ELGVASPELK AQRIEVLNRL AAGEHGIIVA PVAGLRRFLP MKELWKQRQI EISLGQEIDL DTFLHTLHHI GYERKSMVEA PGEFSLRGGI LDIYPLTEEL PFRIEFFDTE VDSIRLFDVD EQRSQDKKES VRFGPATEFL FSQEELKSGI KHLEEGLTKT MQKLSDDKLK TTVLETVSHE IEMLKNGQSI EQMFKYLSIF YNEPASLIDY LPEDGVVILD EISRIQETAS HLESEEAEWY ISLLGEGTII QDLSFSHSFE EFLHHKKRSF VYLTLFLRHI AHTHPQNIVN VTCKTMQDFH GQMQLLKTEI DRWNEGHFTT VVLGTDDERV KKLQHILSDY DIDADIVEGT DILLPGRLQI AVGDLHAGFE MPMQKLVVIT EKELFHKKVK KSQRKQKLSN AERIKSYSEL KVGDYVVHVN HGIGKFLGIE TLEINGVHKD YLNIKYQGND KLYVPIEQID QVQKYVGSEG KDPKVYKLGG NDWKKVKTKV EKSVQDIADD LIKLYAEREA SKGYAYTPDT AEQQEFESSF PYQETEDQLR SIEEIKKDME RGRPMDRLLC GDVGYGKTEV AIRAAFKAIM DEKQVAILVP TTILAQQHYE TIRERFQDYP INIGLLSRFR TRKQQNETIK GLKDGTVDIV IGTHRILSKD VTYKDLGLLI IDEEQRFGVT HKEKIKQLKA NVDVLTLTAT PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNPAL MREAIERELA RGGQVYFLYN RVEDIERKAD EISMLVPDAR VTYAHGKMNE SELESVMLSF LEGQHDVLVS TTIIETGVDI PNVNTLIVFD ADRMGLSQLY QLRGRVGRSN RVAYAYFAYK RDKVLSEVAE KRLQAIKEFT ELGSGFKIAM RDLSIRGAGN LLGAEQHGFI DSVGFDLYSQ MLKDAIEQRR GTDGVENTVN VEIDLEVDAY LPDAYISDSK QKIMMYKQFR GVSAIEDIEE LQEEMIDRFG DYPQEVGYLL QIANIKVLAM KEQIELIKQN KFEVTILFSE QASQNIDGGK LFMLGNSFGR MIGLGMEGSQ LKIVMKTNGL ETSKWLTIAE NLLKGLPDVK KEVINA
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