Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_p0078 |
Symbol | |
ID | 5148595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009475 |
Strand | + |
Start bp | 58668 |
End bp | 59897 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640539004 |
Product | putative secretion protein HlyD |
Protein accession | YP_001220437 |
Protein GI | 148240936 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.36335 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGCAA AGTGGACCAA ACGGATCATC GGTGCAGCGG CCCTGGCCGC GATCGCGGGG GGACTGGCCT GGTTCGCCTG GCCACGGCCG GTCCTGGCGG ATCTCGCGAC CATCGCGAAA GGCCCGATCG AAGTCACGGC CGACGATGAC GGCAAGACGC GCGTCCGCCA CGTCTACACG GTTTCGGCGC CGATCGCCGG CAAGGTGCTG AGGATCTCTC ATCCGCTCGG CGAGCAGGGT CCTTCTCTTC ACGTGGGCGA CGAGGTTGCC GCCAACCAGA CCGTCGCCCT GATGCAGCCG ACGCTCCCGG GCTTCATCGA CGTGCGCTCC CGCGACCAGC TTGAGGCCGA AGTATTGGCT GCGGACGCCG CCATCCAGCA GCAGCAGGCC GAGGTGCAGC GGATCGAGGC CGCGCTGGAC TTCTCGCGGA CCGAATTCCA GCGGGCGCAG ACGCTCTTGC GTACGCAGTC CACCTCGGCT CAGGCGTTCG ACAAGGCGAA ATTCGACGTG GCCAACAACG AAGCCGCCCT GGCGAGCGCG AAGGCCCAGG TCGACATGCG TCGCGCGGTG CGTACCAGCC TGGCGGCTCG CTTGATGGAC CCGGCCAACG CCGCGCCGTC GGCGGAGCCG GCCTGCTGCG TCCGGGTGCT CGCGCCGGCG AGCGGACGTG TCCTGAAGAT CATCCAGGAC AGCGAGGCGA CGGTTCTGCC CGGGACGCCG CTGGTCGACA TCGGCAACCC TCTCGATCTG GAGATCGTCG CCGACCTGCT CTCGACCGAT GCGGTCCAGA TCAAGGTGGG AGCGCCCGTC CGGATCGACG GCTGGGGCGG ACAGCCCATC AGGGGGAAGG TGGTGCGCGT TGACCCCGCC GGCTTCCTGA AGGTCTCGGC GCTGGGGATC GAGGAGCAGC GGGTCCGCGT GACGATCGAT TTCGCGGATC CCCCCGACAC CTGGAGCTCG CTTGGACACG ACTACCGGGT CGTCGTCCAT GTAACTACGT GGAGCGCTCC GGAGGCCCGG ACCGTGCCAG TGAGCGCTTT GTTCCGGAAG GGCAACCAGT GGGCCGTTTT TGCTGACGAG AACGGGCGTG CTCAAATGGT GACGGTCAGC ATCGGCCATC GAAATAACGG GATGGCCGAG GTTCTCTCGG GGCTTGCTGC AGGGGATAGA GTCGTACTGC ATCCTAGCGA CCGGATCGGC GATGGAACGA GAGTAGCCCA ACGCGACTGA
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Protein sequence | MPAKWTKRII GAAALAAIAG GLAWFAWPRP VLADLATIAK GPIEVTADDD GKTRVRHVYT VSAPIAGKVL RISHPLGEQG PSLHVGDEVA ANQTVALMQP TLPGFIDVRS RDQLEAEVLA ADAAIQQQQA EVQRIEAALD FSRTEFQRAQ TLLRTQSTSA QAFDKAKFDV ANNEAALASA KAQVDMRRAV RTSLAARLMD PANAAPSAEP ACCVRVLAPA SGRVLKIIQD SEATVLPGTP LVDIGNPLDL EIVADLLSTD AVQIKVGAPV RIDGWGGQPI RGKVVRVDPA GFLKVSALGI EEQRVRVTID FADPPDTWSS LGHDYRVVVH VTTWSAPEAR TVPVSALFRK GNQWAVFADE NGRAQMVTVS IGHRNNGMAE VLSGLAAGDR VVLHPSDRIG DGTRVAQRD
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