| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_7745 |
|---|
| Symbol | |
|---|
| ID | 5149704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 8137198 |
|---|
| End bp | 8137962 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640562385 |
|---|
| Product | conjugal transfer protein TrbJ |
|---|
| Protein accession | YP_001243492 |
|---|
| Protein GI | 148258907 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0662421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGTCC GTCGTTCCCG CGCGGCGCTT CTTGCCGCGA CGGCTCTTTC ACTTCCGCTT
TGGTTTTCGC CGGTCCTGGT CGCGCCTGCC GCAGCCCAGT GGATCGTCTA CGACCCGACC
AACTATGCGC AGAACGTGCT GCAGGCGGCG CGCGCGCTGC AGCAGATCAA CAACCAGATC
ACCTCGCTCC AGAACGAAGC GCAGATGCTA ATCAACCAGG CGCGCAATCT CGCGAGCTTG
CCGTATTCCT CGTTGCAGCG TCTCCATCAG TCCGTCCAGC GCACCCAGCA GCTTCTCGGC
CAGGCGCAGA ACATCGCCTT CGACGTGCAG CAGGTCGACC GCGCGTTCCA GACCACTTAT
GGCAACGCGT CACTCTCGGC ATCGGATCAG CAATTGATCG CGGATGCGCG CACGCGCTGG
CAGAATACGG TCGGCGGACT TCAGGACGCG ATGCGCGTCC AGGCCGGTGT GGTCGGCAAC
ATCGACACAA ACCGCACGGA GATGTCGGCG CTGGTCGGCC AGAGCCAAGG CGCCACGGGC
GCGCTGCAAG CAACACAGGC TGGCAACCAG ATCCTCGCAC TCCAAGCGCA ACAACTCGCC
GACTTGACTG CTGTCGTGGC AGCCGATGGG CGAGCACGGG CTCTCGCCGA TGCCGAGCGC
GCGGCCGCGG CCGAGCAAGG ACGTGAACAG CGCCGGCGCT TCCTGACGCC CGGCGCCGGT
TATCAGGCCG GAAACGCCCG CATGTTCCCG AATAGCGGCA AATGA
|
|---|
| Protein sequence | MIVRRSRAAL LAATALSLPL WFSPVLVAPA AAQWIVYDPT NYAQNVLQAA RALQQINNQI
TSLQNEAQML INQARNLASL PYSSLQRLHQ SVQRTQQLLG QAQNIAFDVQ QVDRAFQTTY
GNASLSASDQ QLIADARTRW QNTVGGLQDA MRVQAGVVGN IDTNRTEMSA LVGQSQGATG
ALQATQAGNQ ILALQAQQLA DLTAVVAADG RARALADAER AAAAEQGREQ RRRFLTPGAG
YQAGNARMFP NSGK
|
|---|
| |