Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6955 |
Symbol | appA |
ID | 5148911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 7289608 |
End bp | 7291401 |
Gene Length | 1794 bp |
Protein Length | 597 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640561637 |
Product | oligopeptide ABC transporter (substrate-binding protein) |
Protein accession | YP_001242748 |
Protein GI | 148258163 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAGC GTGATCTCCG TCGCCAGATC GCTGATGTCA AAACAGGGCG TCTGTCGCGA CGCGAATTTG TGCAGCGGAT GATCGCCGTC GGGCTGACCG CGCCGATGGC TGGCGCAATG CTCGCGCATT CCGGGATCGC GGTGGCCGCA GAAGCGATTC CCTATAAGCC GACCAAGGCC GGCGGCGGCG GTCCGCTCAA GCTGCTGCTC TGGCAGGCGC CGACGCTGCT CAATCCGCAT TTCGCCGTTG GCACGAAGGA CCAGGAGGCG TGCCGCTTGT TCTACGAGCC GCTCGCCGGC TGGGACAAGG AAGGCAATCT GGTTCCGATC CTTGCCGCGG AGATCCCGAG CAAGGAGAAT GGCGGTCTCG CCGCCGACGG TCTGTCCGTG ATCTGGAAGC TGAAGCCCGG CGTGAAATGG CACGACGGCA AGCCGTTCAC GGCCGACGAT GTCGTCTTCA ACTGGGAATA CGCCAACAAT CCCGAGACCT CGGCGGTCTC GATCGGCAGC TATAAGAACG TCAAGGCAGT CGAGAAGATC GACGATCTCA CCGTCAAGCT GATCTTCCCG CAGCCGACGC CGTTCTGGGC CGATGCCTTC GTGGCTTCGT TCGGCTGCAT CATTCCGAAG CATCTGTTCG GCGACTATAT CGGCGCGAAG TCGCGCGAGG CGCCGGCCAA TCTGAAGCCG GTCGGCACCG GCCCCTATAT GTTCGTCGAC TTCAAGCCGG GCGACACCGT CGCCGGCAAG CGCTTCCCGG ACTATCACGT GCCGACGCAG CCTTATTTCG ACACGGTGGA GATCAAGGGC GGCGGCGATG CGGTGTCGGC GGCACGCGCG GTGTTGCAAA CCGGCGAATA TGACTATGGC TATAATCTGC AGGTCGAGGA CGAGATCCTG ACCAAGCTCG AGGCCGGCGG CCAGGGCAAG ACCGAACTGA CGCTGACCGG AAACATCGAA TATATCGGCC TCAACGTCAC CGATCCCAAT GTCGAGGTCG ACGGCGAGCG CGCCAGCCTC AAGACCAAGC ATCCGTTGTT CTCCGATCCG GAAGTGCGTA GGGCCATCAA CCTGCTGATC GATCGCGCCT CGGTGCAGAA ATTCATCTAC GGCCGCGCCG GCGTCGCGAC GCCGAACTTC CTCAACAATC CCGAGCGCTA CCGCTCCAAG AACAACAGCT TCGAGTTCTC GATCGAGAAG GCCAACCAGA TCCTCGATGC CGCCGGCTGG AAGAAGGGCG CGTCCGGCAT CCGCGAGAAG GACGGCAAGC CGCTCAAATT CGTGTTCCAG ACCTCGATCA ACGGGCCGCG TCAGAAGAAC CAGGCGATCA TCAAGCAGGC CTGCCAGAAG GCGGGCATCG ATGTCGAGCT AAAGTCGGTG GTCGCATCCG TGTTCTTCTC CTCGGACGTT GCCAATCCCG ATACTTACAC GCATTTCTAC TGCGACATGC AGATGTATCA GACGACGATG CCGCAGGCCG ATCCGCAGTT CTTCATGAAT CAGTTCACCT CCTGGGAGTG CGCCACCAAG GAGAACAAGT GGCAGGGCCG AAATGTCTGC CGCTGGCAGA ACAAGGACTA TGACGAGACC TACAAGCTGG CCCAGAGCGA GCTCGATCCG GTCAAGCGCG CCGCGCTGTT CATCAAGCTC AACGACCTCG TCGTGCGCGA CAATTACGTG CTTCCGGAGA TCAACCGGCT CAACGCGATC GGCGTCAAGA ACGGCATGGT GCTGTACAAG AGCGGCTGGG ACAACGACCT GGCGTTCATC GCATCCTGGT ACCGGGCGAG CTGA
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Protein sequence | MNERDLRRQI ADVKTGRLSR REFVQRMIAV GLTAPMAGAM LAHSGIAVAA EAIPYKPTKA GGGGPLKLLL WQAPTLLNPH FAVGTKDQEA CRLFYEPLAG WDKEGNLVPI LAAEIPSKEN GGLAADGLSV IWKLKPGVKW HDGKPFTADD VVFNWEYANN PETSAVSIGS YKNVKAVEKI DDLTVKLIFP QPTPFWADAF VASFGCIIPK HLFGDYIGAK SREAPANLKP VGTGPYMFVD FKPGDTVAGK RFPDYHVPTQ PYFDTVEIKG GGDAVSAARA VLQTGEYDYG YNLQVEDEIL TKLEAGGQGK TELTLTGNIE YIGLNVTDPN VEVDGERASL KTKHPLFSDP EVRRAINLLI DRASVQKFIY GRAGVATPNF LNNPERYRSK NNSFEFSIEK ANQILDAAGW KKGASGIREK DGKPLKFVFQ TSINGPRQKN QAIIKQACQK AGIDVELKSV VASVFFSSDV ANPDTYTHFY CDMQMYQTTM PQADPQFFMN QFTSWECATK ENKWQGRNVC RWQNKDYDET YKLAQSELDP VKRAALFIKL NDLVVRDNYV LPEINRLNAI GVKNGMVLYK SGWDNDLAFI ASWYRAS
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