| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6427 |
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| Symbol | ppsR2 |
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| ID | 5155472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 6695494 |
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| End bp | 6696864 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640561127 |
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| Product | transcriptional regulator PpsR2 |
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| Protein accession | YP_001242243 |
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| Protein GI | 148257658 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCGAGT TTCACGGTCC ACGACCCGAC GTGACGTTGC TGCTCGACAT GGACGGCGTG
ATCCGCGAGG CAACGCTGTC CCCATCCATG TCTGCAGAGA ATGTCGACGC TTGGCTCGGC
CGCCTCTGGT CGGAGATCGT CGATGATGCG AGCGAGAAGA TCGAGCGCAT CATGCATGAC
ACCAAGCGCA CCGGCATTTC CGCCTTTCGC CAGATCACCC AGCGGTTCCC CAGCGGCCTG
GAGCTGCCGA TGGAATTCAC CACCGTGCTG CTCGGTGGCC GCGCCGGCAT GCTGGCGATC
GGCAAGAACC TGCAGGCGGT GGCCGAGCTG CAGGCCCGGC TGATCTCGGC GCAGCAGACC
ATCGAGCGGG ACTATTGGCG CCTGCGCGAG ATCGAGACGC GCTACCGGCT GGTGATCGAG
GATTCCAACG AGGCGGTACT GCTAACCAAG GTCTCGGATC TGCGTATCGT CGAGGCCAAC
CGAACGGCAG CCGCCGCGCT CGGCGTATCG AACCGGCGCC GCGACAATCT GGTCGGCCGC
GAGTTCCTGC ACGAGATTCC GGAGAAGGAC CGCGAGCCGG TCGAGCTCAT GCTGCGGCGG
GTCCGCGACC AGGGCAAGGC GCCAGGCATC GTGATCCATC TCGGCGAGGA CGCCGCGCCC
TGGATGCTCC GGGGATCGCT GATGACCAGC GACAACGCAC CGATGTTCCT GCTGCAGATG
GCACCGATCG GCAAGTCCAT GCAGCGCGGC CCGGTGTCGG ACGATCCGGA ACGGCTGATC
GACAACCTTC CGGACGCCGT CATCAGCATC GACGTCACCG GCGCCATCAC GCGCGCCAAC
CGAGCATTCC TGGAGCTGGT CGAGGTCGGA TCGAAAGAGG CGCTCGTCGG CGAAAAGCTG
AGCCGCTGGC TGACGCGGCC AGGCGCCGAC CTCTCGGTTC TGATCTCCAA TGTCGAGCGC
CATGGAACCG TTCGGCTGCT GTCGACCACC ATCCAGGGCG AGCTTGGCAC CGAGACGGAG
GTCGAGATTT CGGCCGCGGC GCATGGCCAG GACGGCCAGC GCCGGATCGG CCTCGTTCTG
CGCAACATTG CGAGGCGGTT GTCGCCGACC GGGGAGCATG ACAATCTGCG AGCAGCGCTC
GCCGGCCTCA ACGAATCGGT CGGCAAGACA CCGCTGCGCG ATCTCGTGAG GAGTACGGTC
GAGGTCGTCG AGCAGCACTA CGTCCGCGCC GCGCTTGAGC TGGCCAATGG GAACCGGACC
TCGGCCGCCG AAATTCTCGG CCTCAGCCGC CAGAGCCTTT ACGCCAAGCT TGATCGGTAT
AATCTGAGCC AACTCGAAGA AAACGGCGAG GAAACCGAAA AGGGGAGCTA G
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| Protein sequence | MAEFHGPRPD VTLLLDMDGV IREATLSPSM SAENVDAWLG RLWSEIVDDA SEKIERIMHD
TKRTGISAFR QITQRFPSGL ELPMEFTTVL LGGRAGMLAI GKNLQAVAEL QARLISAQQT
IERDYWRLRE IETRYRLVIE DSNEAVLLTK VSDLRIVEAN RTAAAALGVS NRRRDNLVGR
EFLHEIPEKD REPVELMLRR VRDQGKAPGI VIHLGEDAAP WMLRGSLMTS DNAPMFLLQM
APIGKSMQRG PVSDDPERLI DNLPDAVISI DVTGAITRAN RAFLELVEVG SKEALVGEKL
SRWLTRPGAD LSVLISNVER HGTVRLLSTT IQGELGTETE VEISAAAHGQ DGQRRIGLVL
RNIARRLSPT GEHDNLRAAL AGLNESVGKT PLRDLVRSTV EVVEQHYVRA ALELANGNRT
SAAEILGLSR QSLYAKLDRY NLSQLEENGE ETEKGS
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