Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_6079 |
Symbol | |
ID | 5154800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 6303467 |
End bp | 6305509 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640560792 |
Product | putative TonB-dependent receptor |
Protein accession | YP_001241912 |
Protein GI | 148257327 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0972806 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCTCCCG TTTCCCATGC CCGGCACTGC CGCGCCGTCC TGTCCTCGTC CTGTGTGCTC ACATCGATTG CGCTGCTCGG TGCGTTTTCT GCAGCCGCGC AGCAATCCGC CTCCCCGCAT CTGCTGCCGC CCGTCGAGGT CGACCCGCCA CACAAACCGG CCGCCCGGAA ACCGGTCGTC GCCGGCAGAT CTCATGCCCG CAGCGCGGCA TCGGCGCAGA GGCCGGTAGC GCCTGCCGCC GCCAGCCCAA CCGGCATCGC CACGCCAGCC GCCGAGGCCG GCCGGTCGAT CACCGTGGTG ACTGACAAGG ATATCGCCAC CCAGCAGGGC CGCAGCCTGC CGGACATCCT GAGCACGGTC CCCGGCTTGA CCGTCGTGCA GGCCGGCGGT CCGGGCGGGC AGAGCACCGT CTCCACCCGC GGCACCAGCG CCAACCATAC CAAGCTCGTC ATCGACGGCG TCGATGTCGG CAACGTCACC AACAGCAATG GCGCGCCCGA TGTCGAGCAT CTGCTCACCG CCGACATCCA GCGGCTCGAG GTGCTGCGCG GGCCGCAGAG CGGCCTCTAT GGCGCGGATG CGCTCGGCGG CGTGATCTCG ATCACCACCC GCAAGGGTGA CGGACCGGCA CAAGCCACCG GCTCGATCGA AACCGGCGCG TATCGGAGTT TCAACCAGAC CGCGGGACTC AGCGGCTCAA AGGATCAATT CAACTACGCG TTCAACATTG CGCACCTTCA CGCCGGCGAT GTGCCGGTGA CGCCCTGGCA ATTGCTGCCA CCAGGACGGA AGGCGATCGG CAACGCCTAT GACAACGTCA CGGCGTCGAC CAGGCTCGGC GTCGACCTGA ACGAGGCTTG GACGCTGAAC GCGCTGGTTC GCCACACCGA CGCGAGCCTG CTGTTCACCG GGGACAGCGG ATCTCCGAGC TTTCCGAATG CAACCCAAAG CCATCACACC GACCGCCAGT TGACGACCCG CGAGGAAGCC GTCTGGTCGC TGCTCGGCGG CCGCATCCGC AACCATTTCG GCGTGAACTA CGTCAACAAC TGGTCTTACG ATCTGGCGCC CGGCAATCCG GCGCCTACCA TCGCCACCGG CGAGCGCATC AAATATGACT GGCGCGCAGT GGCCGAAATC GCGCCGCGCA ATCATCTTGT GGTCGGCCTG GAGCAGCAGG CCGAGCGGCT GAAGGCGGCC GACGTCCTGG CCGAGAACGG CAACAAGGCC GGCTTCGTCG AGCTGCAGAC CGAATTCGCC AAGCGCTGGT TCGTGGTCGC GAGCCTGCGC GACGATGTCG ACGATCGGTT CGGCGGCCAC GGCACCTACC GGATCGCGCC GGCGGTGATC CTGCCGGTGA CCGAGACCCG GCTGAAGGCG AGCTATGGCA CCGGCTTCAA GGTGCCGACC TTGAGCCAGT TGTATCAGAA TTTTCCGGCC TTCAATTTCT TCGCCAATCC GAACCTGAAG CCGGAGGCGA GCATCGGCTA CGATGCCGGC TTCGAGCAGC CGCTGTTCGA CGATCGGTTG CGCTTCGGCG CGACCTACTT CCACAATGAC ATCACCAACC TGATCAGTTT CAACGCGAAC GCCACCTCCT TTGCCAATAT CGGCTTCGCC ACCACCGAAG GCACCGAGAG CTTCGTCGCG GCGAAACTGA CCGATCGCAT CTGGCTCCGC GCAGACTACA CGTTCACCCG CGCGGTCGAC GCGAGCACCG GTCAGCAGCT GTTGCGCCAG CCGAGAGAGA AATGGAGCGC CACCGCCACA TGGCTGCCGG TCGATGCGCT GACGCTGTCG GCCACCCTGC TGCGCGTCGG CGACTGGCTC GACATCAGCC GCGACGGCAC CACGACCGGC CTCGTCGCGC CCGGCTATAC GCTGGTGAAT CTGCGCGGCG ACTACGCCCT CTCGGACCAG GTCAAGCTGT TCGCCCGGAT CGACAATCTG TTCAACCGCC ATTACCAGAA CCCGACCGGC TTCCTGGCGC CCGGCTTCGG CATGTTCGGC GGCATCCGGA TGGCCACCTC CGGGCTGCAG TGA
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Protein sequence | MSPVSHARHC RAVLSSSCVL TSIALLGAFS AAAQQSASPH LLPPVEVDPP HKPAARKPVV AGRSHARSAA SAQRPVAPAA ASPTGIATPA AEAGRSITVV TDKDIATQQG RSLPDILSTV PGLTVVQAGG PGGQSTVSTR GTSANHTKLV IDGVDVGNVT NSNGAPDVEH LLTADIQRLE VLRGPQSGLY GADALGGVIS ITTRKGDGPA QATGSIETGA YRSFNQTAGL SGSKDQFNYA FNIAHLHAGD VPVTPWQLLP PGRKAIGNAY DNVTASTRLG VDLNEAWTLN ALVRHTDASL LFTGDSGSPS FPNATQSHHT DRQLTTREEA VWSLLGGRIR NHFGVNYVNN WSYDLAPGNP APTIATGERI KYDWRAVAEI APRNHLVVGL EQQAERLKAA DVLAENGNKA GFVELQTEFA KRWFVVASLR DDVDDRFGGH GTYRIAPAVI LPVTETRLKA SYGTGFKVPT LSQLYQNFPA FNFFANPNLK PEASIGYDAG FEQPLFDDRL RFGATYFHND ITNLISFNAN ATSFANIGFA TTEGTESFVA AKLTDRIWLR ADYTFTRAVD ASTGQQLLRQ PREKWSATAT WLPVDALTLS ATLLRVGDWL DISRDGTTTG LVAPGYTLVN LRGDYALSDQ VKLFARIDNL FNRHYQNPTG FLAPGFGMFG GIRMATSGLQ
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