| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3349 |
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| Symbol | |
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| ID | 5153936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 3504553 |
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| End bp | 3505068 |
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| Gene Length | 516 bp |
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| Protein Length | 171 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640558209 |
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| Product | putative conjugal transfer protein (traF) |
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| Protein accession | YP_001239356 |
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| Protein GI | 148254771 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.236626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.920518 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAG ATGCTGTGCT TCGTCTTGCG CTCATCGGAG TGGCTGCCAT CGCCGTGTCG
GCCGTGCCGC AGTCGTCGAC CGTCCGCTTT GTCTGGAACC TCTCTGCAAG CGTCCCGACG
GGCCTCTACC GGCTGCGCCC CAGCGGCGAT CGCTCCATTG GCGAGATCGT TGCGGTGCAG
CCGCCGCAGC CGATCGCCGA TTTCCTGGCG AGCCGAGGCT ACCTGCCGCG CGGCGTACCG
ATGATGAAGC ATGTCGCGGC GCTGCCCGGG CAGGTCGTCT GCAGGCACGG ACTCGCGATT
CTCATCGACG CGGTCGAGGT GGGGCAGGCG CAAGAGCGTG ATAGCCGGGG GCGGCCACTG
CCGGTGTGGC AGGGCTGCCG AACGCTCAGC AAAGATGAAG CTTTTCTGAT GAACACGCGC
TCGGCGATCT CCCTCGATGG GCGATATTTC GGCGTGCTGC CGGTGTCCGC CATCGTCGGT
CACGCCGAGC CGCTGTGGGT GGGTGGGGAG GAGTGA
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| Protein sequence | MTTDAVLRLA LIGVAAIAVS AVPQSSTVRF VWNLSASVPT GLYRLRPSGD RSIGEIVAVQ
PPQPIADFLA SRGYLPRGVP MMKHVAALPG QVVCRHGLAI LIDAVEVGQA QERDSRGRPL
PVWQGCRTLS KDEAFLMNTR SAISLDGRYF GVLPVSAIVG HAEPLWVGGE E
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