| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2238 |
|---|
| Symbol | |
|---|
| ID | 5150525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2313340 |
|---|
| End bp | 2316417 |
|---|
| Gene Length | 3078 bp |
|---|
| Protein Length | 1025 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640557166 |
|---|
| Product | putative Outer membrane autotransporter protein |
|---|
| Protein accession | YP_001238322 |
|---|
| Protein GI | 148253737 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.669565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATTCGA AGATCAGGAA GCGCAGCGAA GCGGCTGCCG CAGGCGTTGT GCTGCTGTCC
GCATGGATGA CGACCGGCGG CGCAAAGGCC GAATGTACGA CGCCTGGTGT GGCCGTCAGT
TGCAGTGGGA GCATCACAAC GGCCGTCACG GTATATGACG CGGCAGCGGC TACCGCGACG
CCCGCGAGCG GAAGTAACGC CTACACGCCG GCGAACCCGG CTTTCCCCGC AAGGGGCTAC
AATCCAAATC CGCCGACGGC GATCATCACG CTGGACGCGA CAGCCAACCG CACCCTCGTC
ACCAACACCC AGGCGGGTCT CGCCGATCGC GGCATGATCG CCGCCAACTT CTCGAATGCC
GAGAACCCGG CCGTCAACAA CGTGGTGATC AACAATGCCG GCTGGCTCAG CCTCACCACC
AGCCAGCTGA GCGCCGGCCG GCTGCACGTC GTCGTCGCCG ACAGTCAGGT CAACCGGTTT
ACGGTCAACA ACACCGGCAC GCTGGCGGCG ACGCAGAATG TCTTCAGTAC GTTCGATCCG
GCCCGGCTCA CCGTCTCGAC CGGGGCCACC GCGACGGCGC GCTATAACGG CACCAATCTG
GCGATCATCT CGGCGCTCTA TTCCGACGAC AACACCAACA GCTTCGTGCT GAACAACCGG
GCCGGCGGGA CTGTGTCGGC GACCGGCCAT TTTGCTGCCG CCTATTACGG CCGGGCCGCG
ACGATCATCG CCAACTCCGG CACCATCGCC AACACGGACT GGACGGCGGC GAGCCGCTTC
TACGACGGCC ATTGGGCGAT CGCTGCCTTC GCCGGCGCCG AGTTCAGGAC GGTTGCCGGC
AGCAACCCGG ACACGCCGCT TTATGCGTTC GACAGCAATG GCAATGTGAC GGTGAGTGAA
ACCAAGACGC TGAACCTGAC CAACACGGCA GGCGGCGTCA TCAAGGGCGA CATCCTGGCG
CTGGATACCA ATCCGTTGAC AACCGCGGCT GGACGAGCGT CGGGCCAGGC ATTTCCGCTG
ACAGGCAGCG GCTCCAATTC GGGTCCGCGC GACAGCGTCA TCGCCAATGC CGGGCTGATC
CAGGGCAACC TCTATCTCGG TTCGGGCGCG CACAACGTCA CCAACAGCGG CACGATCTCC
GGAAAGATCG AGGTCGACCA GAGCGCCTCG CGCGGGTCGT TCACCAAGGG GATCGCAGGC
ACTGCGGCCG GCACCTTCAG CAGCTCGGGG ACGGGGACCG ATGCGGGCGG CAGGGCCTGT
CCGGCCGCCG GCACCAACAC CACCGATCCG CTCTGTGCCG CGACCACCGC CCAGGCCGCC
AGCTTTTCTG GCGCGCGCAA TTTCAGGCTG GTCAACAGCG GCAGGCTGGA TGGCGATATC
ACGATCATCG ATCAGAGGGG GGCGTCCAAC ACCATCTTGC TCAGGGGCAC CGGTTTTAGC
GGCAATGTCG TGGCTCGGAA CGGCATCGGC AGCAACGCGC TGACACTGGA CGGGGTGACG
AGCCTCGCCA GTGTCGTCAA TTTCGGCATG CTCGATCTGA TGAAATCGCA GGTGACGGTC
AACAGCGTCA ACGGCGTGCA GCTCGTCGAC AATGCCGTGC TGCGCACCAC GATCTATGGA
CCGGGCGGCA CCGCGGCAGC GCCGTCGACC AATCTCGGCA ACATCAGTGG CAGGCTGGCC
TTTGCGGGCA CCGGCACGAT CGCCCCGCGG CTTCAGGGCA TCGTGCGCGA CGGCGATGTC
TACCGTGTGG CGACCTCGGT CTCGACCGCG CCGCTCAACG TCGATTTTTC CGGCGCGCTC
GTGAGCTTCA ATGCGGATAG CACGACCGGT GCGCTGTTGC TGAAGGCCAA TGTGCGGTCA
CCGGCGAGCA TCGCCGGACT CTCGCCGAGC AGCCTCGCGG CACTCGATCA TCTGGTCGGC
TATCGCGGCG GCAACGCGCA ATTGCAGGCG CTGGGCGGCG CGGTCCAGAG CCTGCGCAGC
GACAACGAGG TGCGCCGCGC CGGCGACCAG CTGCGCCCGT TCGTCAACGG GGCGCAGATC
GAGGTCCCGC TGGCGACTGC CGCGCTGCTG CAGGGCCAGA TCGACAACCG CCTCACGGCT
GCGGCGGCCG GCGCGTCGCC GAACGCGCGC GTCGCCTCGG CCTTCGCCGA TGACACAGAC
CCGCTGACCT CGGTGCTGCT GGCCTTTGCC CCAACCAAAG CGCGTCCGAC CTTGAAGGCG
CCGGCCGTGG TGCCCGAGCC CGAGCGCACG GTGTGGGGCA GCCTGATCGG CACCAACATC
TCGCAGCGCG AGGTCGGCGG TGTCGCGGGC TATGCCGGCA ACACCGGCGG GCTGGTGGCG
GGCATCGATC AACGGATCGG CAGCGCGTCA CGCATCGGCG CCGCGTTCGG CTACGCCGCC
AGCGCGATGG ACGACAAGAC GGCAGCGGGC GACTCGGTCG GCATCCAGCA TTACCAGGGC
ACGGTGTACG GCGCCTATGT TCAGCCGTCC TGGTACGTCA GCGGATCCGC CGGCGTCGCG
CTGCTCGACT ACACCACCAC GCGCCGCATC GGCTTCGCGG GCTTTGCTGA CAGCGTGTCG
GGCAGCCACA AGGGATGGTT GACCGTGGGC CGCGCCGAGC TCGGCGTCCC CGTGAAGGTG
GATCAGGCCG TGCTGACGCC CTTCGCCGGG GTCGCGTTCG CTCATCTCGA CCAGCAGGGC
TACACCGAGG CCAGCGCGGC CGGGGCAGCG CTCACCATCG CCAAGCAGAC CACCAACTCG
GTCCGCTCCA ATCTGGGCCT GCGTTCGATG ATTCCGCTTC TGGTCACATC GACCTACGGC
TTCGGCCTGG AGACGCTCGC GGCATGGCGG CACGAATTCG GCAACACGGC GCAGACCGTC
ACGGCGGGCT TTGCCGGAGG CGCCGGCACG TTCTTCGCCG CCGGACCATC GCCCACGCGC
GACACAGCGG AGCTCGGCGC CGCGCTGAAG CTGATCGCGT TCGGCGACCG GCAGTCGCTT
TCGCTCGGCT ACAACGCCGT GGTGGGAAGC GCCTATCTCG AGCAGTCGGC CGTGCTGAAA
GTTCGCGCCG AGTTCTGA
|
|---|
| Protein sequence | MDSKIRKRSE AAAAGVVLLS AWMTTGGAKA ECTTPGVAVS CSGSITTAVT VYDAAAATAT
PASGSNAYTP ANPAFPARGY NPNPPTAIIT LDATANRTLV TNTQAGLADR GMIAANFSNA
ENPAVNNVVI NNAGWLSLTT SQLSAGRLHV VVADSQVNRF TVNNTGTLAA TQNVFSTFDP
ARLTVSTGAT ATARYNGTNL AIISALYSDD NTNSFVLNNR AGGTVSATGH FAAAYYGRAA
TIIANSGTIA NTDWTAASRF YDGHWAIAAF AGAEFRTVAG SNPDTPLYAF DSNGNVTVSE
TKTLNLTNTA GGVIKGDILA LDTNPLTTAA GRASGQAFPL TGSGSNSGPR DSVIANAGLI
QGNLYLGSGA HNVTNSGTIS GKIEVDQSAS RGSFTKGIAG TAAGTFSSSG TGTDAGGRAC
PAAGTNTTDP LCAATTAQAA SFSGARNFRL VNSGRLDGDI TIIDQRGASN TILLRGTGFS
GNVVARNGIG SNALTLDGVT SLASVVNFGM LDLMKSQVTV NSVNGVQLVD NAVLRTTIYG
PGGTAAAPST NLGNISGRLA FAGTGTIAPR LQGIVRDGDV YRVATSVSTA PLNVDFSGAL
VSFNADSTTG ALLLKANVRS PASIAGLSPS SLAALDHLVG YRGGNAQLQA LGGAVQSLRS
DNEVRRAGDQ LRPFVNGAQI EVPLATAALL QGQIDNRLTA AAAGASPNAR VASAFADDTD
PLTSVLLAFA PTKARPTLKA PAVVPEPERT VWGSLIGTNI SQREVGGVAG YAGNTGGLVA
GIDQRIGSAS RIGAAFGYAA SAMDDKTAAG DSVGIQHYQG TVYGAYVQPS WYVSGSAGVA
LLDYTTTRRI GFAGFADSVS GSHKGWLTVG RAELGVPVKV DQAVLTPFAG VAFAHLDQQG
YTEASAAGAA LTIAKQTTNS VRSNLGLRSM IPLLVTSTYG FGLETLAAWR HEFGNTAQTV
TAGFAGGAGT FFAAGPSPTR DTAELGAALK LIAFGDRQSL SLGYNAVVGS AYLEQSAVLK
VRAEF
|
|---|
| |