| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1277 |
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| Symbol | gspD |
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| ID | 5150031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 1357578 |
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| End bp | 1359833 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640556264 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001237423 |
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| Protein GI | 148252838 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGCTCG CAGGCACCGT CCTGCTCGCC TCCTGCAACA TGGCGACGCT GAATTCTCAG
GCCAGCGCGC CGGCGGATGT CGACGTGATC GACAAGGTCC GCTCGCTCGA TATCTTGCCA
CGCGATGAGC GGCCGGTCGG GTCGCTCCAG AGCCGCCCCG AGGTCGAACG CGCGAGCGCG
CGGACCTATC AGGGGACGGT GGTTCAGGAG GTCGCCGAGG TCAGGCCGCA GCCGGCGGCC
GATGGCAAGG GCTACGATCT CAATTTCGAG AACACGCCGA TCGCGCTGGT CGCGAAGGTC
GTGATCGGCG ACATTCTCGG CGCCGGCTAT TCGATCGATC CGCGCGTCCA GGGCAGCGTG
AGCCTGGTCT CCGCGCGGCC GGTGCCGAAA TCCGACATTC TGTTCGTGCT GGAAAGTGCG
CTGCGCCTGT CAGGCGTCGT GCTGGTCCGC GAGGGCGGCG GCTACAAGCT GACGCCGCTC
GGCGATGCCA TCGGGGCCGG CCGCGTCGAC GGCGAAGCCG GTCGCGCCGA GCCCGGCTAC
GGCGTGTCGG TGGTGCCGCT GCAATATGTC GGCGCGCAGA CGATCCTCAA GCTGATGGAC
AGCTTCGCAA CCCGCGCCGG CAGCGTGCGC GCCGACTCCA CGCGGAACCT GCTGCTCATC
CAGGGCACCG GCGCCGAGCG GCGCTCGGCG ATCGAGACCG CGCTGAGCTT CGACGTCGAT
TGGATGCGCG GCCAGTCGGT CGGCGTCTTT CCGGTCAGCA ATTCGGCGCC CGAGCCGCTC
GTCGCCGAGC TCGAAAAGAT CATGGACACC GGCGAGAACG GGCTGAGCCA GAATCTGGTG
AAGCTGCAGG TCGTCAGCCG GCTCAACGCC ATCATGGTGG TGACGCGCAA GCCGGCGCTG
CTGCAGACCG CGGCGACCTG GATCCGCCGG CTCGACCAGG CCGATTCCGG GCGCACCAGC
GTCCACGTCT ATCGCATCCG CTACGGCGAT GCGCGCCAGC TCGCGAAGGT GCTCACCGAC
ATGTTCGGCG GCGCCAGCTC CTCGTCCACC GACAGCACCG ACAATCAGGC GGCGCCCGGC
TCGGATGGGA CGACGACATC GGTTGCCGAT CGGCTGTCCT TCAACACCAA CGCAGCCGGA
TCAGCCAACG GCGGTGCGAC GACATCGAGC CGGCTGCAAG GCGCCGGCGG CCTGTCCGGG
ATGCAGTCCT CAAGCGCGTC ATCGGCGTCC AGCAGCACGC CGTCGGCGAG CGGGCTGGAA
CCGCGCTCCG GCGGCAGCGG CGGCCAGGCG CTGATGCCGA ACGTCCGCAT CACGCCGGAT
ACCGTCAACA ATTCGCTGCT GATCTATGCT GATCGCGAGA GCTATCGCAC CATCTCCAGC
ACGCTGCAGC AGCTCGACCA GCCGGTGCTG CAGGTCGGCA TCGACGCGAC CATCGCCGAG
GTGACGCTGA CCAACGAATT GTCCTACGGC GTGCAGGCTT ATCTGTCGAG CAAGGTGCTC
GGTCTCGGCA CCGACAAGGG CTCGATCACC AATACCCAGA CGACCTCGGT GGCGACGGCG
ACGACCGCGG CCGCGACCTC GGCGCTGATC AACCGCGCGC TGCCCGGCTT CAACTTCCTG
ATCGGGCACG AGGCGTCACC CAACATGATC CTCGATGCGC TGCATACGGT GACCAGCGTG
AAGGTGCTCT CGAACCCGTC GCTGGTCGTG ATCAACAATC AGACGGCCAC CCTGCAGGTC
GGCGATGTCG TGCCGGTCTC GACCGGCAGC GCGACGGTGC TGTCGTCCAG CAACACAGTC
GTGAACACCA TCGACTATCG CAACACCGGC ATCATCCTGC GTGTCGTGCC GCGGATCGCC
GCCAATGGCA ATGTCCGGCT GGAGGTCGAG CAGGAGATCA GCAACGTCGC CGCGCAGAGC
GCCGCGAGCC TGACGCCGAC GGTGTCACAG CGCAAGGTCA AGAGCGCGAT CTCGGTCGCC
AACGGCCAGA CCGTGCTGCT GGCGGGCCTG ATCAGCGAGC AGCAGAACGG CAACCGCAAC
GGCATTCCCG GCTTCGACGA GATCCCGATC CTGGGCGACA CGTTCTCGCA TCAGGACAAG
AAGGGCACCC GGACCGAGCT GATCATCTTC ATCCGGCCGC AGATCATCCG CGACGGCAGC
GATGCTCATC AGGTGGCCGA AGAACTCCGT TCCAAGCTCC GCGGATCGGT CGGAGCCAGC
ATCACGGATG ATTTGCGTGT CCGCACCACC CGCTGA
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| Protein sequence | MLLAGTVLLA SCNMATLNSQ ASAPADVDVI DKVRSLDILP RDERPVGSLQ SRPEVERASA
RTYQGTVVQE VAEVRPQPAA DGKGYDLNFE NTPIALVAKV VIGDILGAGY SIDPRVQGSV
SLVSARPVPK SDILFVLESA LRLSGVVLVR EGGGYKLTPL GDAIGAGRVD GEAGRAEPGY
GVSVVPLQYV GAQTILKLMD SFATRAGSVR ADSTRNLLLI QGTGAERRSA IETALSFDVD
WMRGQSVGVF PVSNSAPEPL VAELEKIMDT GENGLSQNLV KLQVVSRLNA IMVVTRKPAL
LQTAATWIRR LDQADSGRTS VHVYRIRYGD ARQLAKVLTD MFGGASSSST DSTDNQAAPG
SDGTTTSVAD RLSFNTNAAG SANGGATTSS RLQGAGGLSG MQSSSASSAS SSTPSASGLE
PRSGGSGGQA LMPNVRITPD TVNNSLLIYA DRESYRTISS TLQQLDQPVL QVGIDATIAE
VTLTNELSYG VQAYLSSKVL GLGTDKGSIT NTQTTSVATA TTAAATSALI NRALPGFNFL
IGHEASPNMI LDALHTVTSV KVLSNPSLVV INNQTATLQV GDVVPVSTGS ATVLSSSNTV
VNTIDYRNTG IILRVVPRIA ANGNVRLEVE QEISNVAAQS AASLTPTVSQ RKVKSAISVA
NGQTVLLAGL ISEQQNGNRN GIPGFDEIPI LGDTFSHQDK KGTRTELIIF IRPQIIRDGS
DAHQVAEELR SKLRGSVGAS ITDDLRVRTT R
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