| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0557 |
|---|
| Symbol | |
|---|
| ID | 5156007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 555585 |
|---|
| End bp | 558725 |
|---|
| Gene Length | 3141 bp |
|---|
| Protein Length | 1046 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640555568 |
|---|
| Product | AcrB/AcrD/AcrF family mulitdrug efflux protein |
|---|
| Protein accession | YP_001236741 |
|---|
| Protein GI | 148252156 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.644093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.291985 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGA ATATCTCGGC ATGGTCGATC CGGAACCCGC TGCCGTCGAT CCTCTTCTCG
CTCATTCTCC TGATTCTTGG CTGGATGAGC TTCAGCAAGC TCGCGGTGAC GCGGCTGCCG
AACGCCGACA TTCCGGTGAT CTCGGTCGCG GTGGCGCAGT TCGGCGCGGC GCCGTCGGAG
CTTGAATCCC AGGTCACCAA GATCATCGAG GACGGCGTGT CCGGCGTCGA GGGCGCGCGC
CACATCCAGT CCCTGATCAC CGACGGCCTC TCGGTCACGA CGATTACGTT CGCGCTCGAG
ACCAACACGG ATCGCGCCAT CAACGACGTC AAGGACGCCG TGACTCGGGT GCGCTCCGAC
CTGCCGCAGA ACGTCACCGA GCCGTTGATC TCGCGCGTCG ACAAGATCGG TTTGCCGATC
GTGACTTATG CGGCGATCTC GCCAGGCAAG ACGCCGGAGC AACTGTCCTT CTTCGTCGAC
GATGTGGTCA AGCGCGAGCT GCAGGGCGTC CGCGGCGTCA GCCAGGTCGA GCGCATCGGC
GGCGTCGAAC GCGAAATCCT GGTCTCGCTC GATCCCGACC GTCTGCAGGC CATGGGCCTC
ACGGCGGTGA ATGTCAGCCA GAGCCTGCGC GGCACCAATG TCGACGTCGC CGGCGGCCGG
GCCGAGATCG GCAAGAACGA TCAGGCGATC CGCACGCTTG CCGGGGCCAA GACGCTGAAC
GAGCTGTCGA ACACGATGAT CCCGCTGTTC GGCGGCGGCG AGGTGCGGCT CGCCGATCTC
GGCACCGTCA CCGACACGAT CGCCGATCGC CGCACCTTCG CGCGCTTCAA CGGCGAGCCG
GTGGTGGCGC TGGGCATCAA GCGCGCCAAA GGCGCCAGCG ACGTGGTCGT CGCTGCGGCC
GTGCAGAAGC GCATCGACGA GGTGAAGGCC GCGCATCCCG ACGTCGATCT CAGGCTGATC
GATACCTCGG TCGAATTCAC CAAGGGCAAT TACGAGGCTG CGATCTCGAC CCTGTTCGAG
GGCGCGATTC TTGCCGTCAT CATCGTGCTG CTGTTCCTGC GGGACTTCAG GGCGACGGTC
ATCGCGGCGA TCTCGCTGCC GCTGTCGATC TTCCCGGCCT TCTGGGCGAT GGATATCCTC
GGCTTCTCGC TGAACATGGT CTCGTTCCTG GCGATCACGC TGTCGACCGG CATTCTGGTC
GACGACGCGA TCGTCGAGAT CGAGAACATC GTGCGCCATA TGCGGATGGG CAAGTCGCCC
TATCGCGCGG CGCTGGATGC CGCGGACGAG ATCGGTCTCG CGGTGATCGC GATCAGCCTC
ACCATCATTG CGATCTTTGC GCCCGCAAGC TTCATGTCGG GGATTGCCGG CCAGTTCTTC
AAGCAGTTCG GCATTACCGT CTCGGTGCAG GTGTTCTTCT CGCTGCTCGC CGCGCGGTTC
GTCACGCCGA TGCTGGCGGC CTACTTCATG AAGCATCACG ATCACGAGGA TCCGCCGCCG
GGCTTCATCC TGCGCGCCTA TCAGCGCATC GTGACCTGGT CGGTGCAACA CTACTTCGTG
ACGGTGCTGC TCGGCATCGG CATCTTCGCT GCCTCGATCT GGAGCACGAC CCTGCTGTCG
CAAGGGTTCC TGCCGGCGCA GGACGCGGCG CGATCGCTGC TCGCAATCGA GCTGCCGCCC
GGCGCGCAAC TCGCCTACAC CGAGAAGGTC ACCGAGGAGA TCGTGGCGCG GCTGCGCAAG
CGGCCCGAGG TGCGCAGCGT CTTTGTCGAC GGCGGCAGGC TGCAGGGGGC GATGGAGGTT
CGCCGCGCCG GCATGATCGT CAACTACACC CCGAAGACCG AGCGCAAGAT CACCCAGAAG
GAGCTCGAAC TCGCGATCAC CAAGGATCTC GAGACCATCC CCGACATCCG CTTCTGGTTC
ACGGATGAGA ACGGTCTGCG ACCGATCAAG CTGGTGCTGA CGGGGTCTGA CCCCAAGCTG
GTCGACAATG TCGCCAGCGA ACTTGCGTCG CAGATGAAGC GGATCCCGAT CATCTCCAAC
GTGGTGTCCG ACACGTCGCT CGACCGGCCG GAATTGCGGG TGCAGCCGCG CGCCGATCTG
GCCGCGCGCC TCGGCGTGTC GACTGAGAGT TTGTCGCAGA CGATTCGCGT CGCGACGATC
GGCGATGTCG GGCCTGCGCT GGCGAAATAT GATGCGGGCG GCCGCCTGGT CCCGATCCGG
GTCCAGCTCG AGGATGCCGC GCGGGGCGAT GTGAAGATCC TCGAACAGCT GCGCGTGCCG
CTCGGCCAGT ATGGTGAGAA GGGTGGCGTG CCGCTGGCGG TGGTCGCCGA CATCAAGCTC
GATCAGGGCC CGACCAGCAT CAGCCGTTAC GATCGCGGCC GGCAGGCCAC GGTCTCGGCT
GATCTCGTCG GGCTGGCGGC GCTCGGCGAT GCGACCAAGC AGATCGACGA CCTGCCGGTC
CGGAAAAGCA TGCCGGCGAG CGTCAAGCTG ATCCCGTCGG ACGATGCCGA GAGCCTGAAC
GAGCTGGCGT CCGGCTTCAT CACGGCGATC ACGGCGGGGC TGATGATCGT CTATGCGGTG
CTGGTGCTGC TGTTCGGCAC CTTCCTGCAG CCGATCACGA TCCTGTTCTC GTTGCCGCTG
TCGATCGGCG GCGCCATCGG CGCCTTGATG CTGACCGGCA AGCAGCTCAC GATCCCGGTC
TATATCGGCA TGATGATGCT GATGGGCATC GTCACCAAGA ACGCGATCAT GCTGGTCGAG
TTCGCCGTCG AGGCGATCCA TGCCGGCACC AGACGCGACG AGGCGATCAT CGATGCCGGC
ATGAAGCGGG CCCGTCCGAT CGTCATGACC ACGATCGCGA TGGTCGCGGG CATGATGCCG
AGCGCGCTCG CGGTCGGCGC GGGCGGCGAA TTCCGTTCGC CCATGGCGCT GGCCGTGATC
GGCGGGCTGG TGTTCTCGAC AGTCCTGTCG CTTCTGTTTG TGCCTGCGAT GTTCCTGGTG
ATGGACGATC TCAGCACGCT GTTCGGACGG CTCGGCCGCC GGCTGATCGT GTCTGACGGA
ACGGACGAGC CGGGCCACGA CGCGGAGGGC GGACACGCCC AGAGGCCGCG GCCCTCGGTA
GTGTCGCCGG CGGCGGAGTG A
|
|---|
| Protein sequence | MALNISAWSI RNPLPSILFS LILLILGWMS FSKLAVTRLP NADIPVISVA VAQFGAAPSE
LESQVTKIIE DGVSGVEGAR HIQSLITDGL SVTTITFALE TNTDRAINDV KDAVTRVRSD
LPQNVTEPLI SRVDKIGLPI VTYAAISPGK TPEQLSFFVD DVVKRELQGV RGVSQVERIG
GVEREILVSL DPDRLQAMGL TAVNVSQSLR GTNVDVAGGR AEIGKNDQAI RTLAGAKTLN
ELSNTMIPLF GGGEVRLADL GTVTDTIADR RTFARFNGEP VVALGIKRAK GASDVVVAAA
VQKRIDEVKA AHPDVDLRLI DTSVEFTKGN YEAAISTLFE GAILAVIIVL LFLRDFRATV
IAAISLPLSI FPAFWAMDIL GFSLNMVSFL AITLSTGILV DDAIVEIENI VRHMRMGKSP
YRAALDAADE IGLAVIAISL TIIAIFAPAS FMSGIAGQFF KQFGITVSVQ VFFSLLAARF
VTPMLAAYFM KHHDHEDPPP GFILRAYQRI VTWSVQHYFV TVLLGIGIFA ASIWSTTLLS
QGFLPAQDAA RSLLAIELPP GAQLAYTEKV TEEIVARLRK RPEVRSVFVD GGRLQGAMEV
RRAGMIVNYT PKTERKITQK ELELAITKDL ETIPDIRFWF TDENGLRPIK LVLTGSDPKL
VDNVASELAS QMKRIPIISN VVSDTSLDRP ELRVQPRADL AARLGVSTES LSQTIRVATI
GDVGPALAKY DAGGRLVPIR VQLEDAARGD VKILEQLRVP LGQYGEKGGV PLAVVADIKL
DQGPTSISRY DRGRQATVSA DLVGLAALGD ATKQIDDLPV RKSMPASVKL IPSDDAESLN
ELASGFITAI TAGLMIVYAV LVLLFGTFLQ PITILFSLPL SIGGAIGALM LTGKQLTIPV
YIGMMMLMGI VTKNAIMLVE FAVEAIHAGT RRDEAIIDAG MKRARPIVMT TIAMVAGMMP
SALAVGAGGE FRSPMALAVI GGLVFSTVLS LLFVPAMFLV MDDLSTLFGR LGRRLIVSDG
TDEPGHDAEG GHAQRPRPSV VSPAAE
|
|---|
| |