Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_0435 |
Symbol | |
ID | 5154978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | - |
Start bp | 435951 |
End bp | 438857 |
Gene Length | 2907 bp |
Protein Length | 968 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640555454 |
Product | conjugal transfer relaxase TraA |
Protein accession | YP_001236627 |
Protein GI | 148252042 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.441479 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGATCT ACCATTTCTC CGTTCAGGTC ATCGGACGCG CGGCGGGCCG CAGCGCGGTC GCAGCCGCCG CCTACCGTTC GGCCTCGCGG CTGCGGGACA ACCGGCTAGG CCGCGATCAG GACTTTTCCG CCAAGCGCGG CGTGGTTCAT TCCGAGGTCA TGCTGCCGGA GAACGCGCCG GAGGAATGGC ACGACCGCGA AAAGCTCTGG AACGATGTCG AAGCGTTCGA GAAGCGGAAG GACGCCCAGC TTTGCCGCGA GGTGGAGTTC GCTATCCCGC GCGAGATGCC GCAGGCGCAG GGCGTCGAAC TCGCCCGCGA CTTCGTGAAG GCCGAGTTCG TGGATCGGGG CATGATCGCC GACCTCAACG TGCATTGCGA CATGGGCGCG GACGGCCAGC CCAAGCCCCA CGCCCACGTC ATGCTCACCA TGCGGTCGGT GGACGAGAAC GGTTTCGGCC CGAAGGCGCG GGACTGGAAC CGCACGGAGT TTGTGGAGCA TTGGCGCGAG CGTTGGGCCG ATCATGTCAA CGAGCGGCTG GCCGAACTCG ACATCGACGC GCGGATCGAC CATCGCAGCC TTGAGGCCCA GGGCATCGGC CTTGAACCGC AGACCAAGAT CGGCGCGCCC GCGCAACGCA TCGAGGCCGC CGGGCTTGAG GCCGACCGCG CCGAGGACCA CAGGCGCATC GCCCGCGAGA ATGGCGCGCG GATCGTCGCC GATCCGTCCA CCGCGCTTGA CGCGATCACG CGGCAGCAAT CGACCTTCAC TCGGCGTGAC CTGGCGATGT TCGCGCACCG GCACAGCGAC GGCGTGGAGC AGTTCAACGA AGTGATGGGC GCGATGCGTA ACGCGCCCGA TCTTGTCGAA CTCGGCAAGG ACGGTCGCGG CGAGGAGCGT TTCACGACCC GCGAGATGAT CGAGGCAGAA CAGCGCCTGC ATCGGGCCGC CGCGATGATG GCTGAACGGG AACGTCATGA GGTCAGCGGC AGGAACCGCG AAGCCGCATT GGCCCGCGCG GCGGATCGCG GCCTTGTCCT GTCCGGCGAG CAGGCTGAGG CGCTGGCGCA TGTCACGGAC GGACGCGATC TTGGCATTGT GGTGGGGTAT GCCGGAACGG GCAAGAGCGC GATGCTGGGT GTGGCGCGCG AGGCTTGGGA GGATGCCGGT TACACCGTGC GCGGCGCGGC CCTGTCCGGT ATCGCCGCCG AGAATCTGGA GGGCGGATCA GGCATCGCAT CGCGCACCAT CGCCAGCATG GAGCATGGTT GGGCGCAGGG CCGCGACCTT CTCACATCCC GCGATGTGCT TGTCATCGAC GAGGCGGGCA TGGTCGGCAC GCGGCAGTTT GAGCGCGTGC TGTCCCATGC CGCCGACGCG GGCGCGAAGG TCGTGCTGGT CGGCGATCCG CAGCAGTTGC AATCCATCGA GGCGGGCGCG GCGTTCCGTT CGATCCACGA ACGCCACCGC GGCGCGGAGA TGGGCGAGGT GCGCCGCCAG CGGCAGGACT GGCAGCGCGA CGCCACCCGC GACCTGGCGA CCGGCCGAAC CGGCGACGCG ATCCATGCCT ATGACGCGCA TGGCATGGTG CATGAGGCCG CATCACGCGA GCAGGCGCGC GGCGAATTGA TCGACCGCTG GGACCGCGAG CGGCAGGCGA ACCCGGACGC AAGCCGCATC ATCCTCACTC ACACCAATGC CGAGGTGCGC GCGCTAAACG AGGTGGCGCG TGGGCGGATG CGTGAAGCCG GAAACCTTGG CGACGACGTG TATGTCGCCG CCGAACGCGG TGCCCGGAAC TTCGCACCTG GCGACCGCGT GATGTTCTTG GCTAACGAGC GCGGGCTTGG CGTGAAGAAC GGCACGCTCG GGACCATCGA GCAAGTCAAC GCCCAGAGCA TGACCGTGCG CACCGATGAC GGCCGCGATG TGGCGTTCGA CCTGAAGGAC TACAATCGCA TCGACCACGG CTATGCCGCG ACGATCCACA AAGCGCAGGG TATGACCGTG GATCGCGCCC ATGTGCTGGC GACACCGGGC ATGGACGCTC ACGGCAGCTA TGTCGCCCTC TCGCGCCACC GCGACGGTAT GGACCTGCAC TATGGCCGCG ACGACTTCGC CAGTCAGGAC AAGCTCATTA GCGTCTTATC ACGCGACCGG GCCAAGGACA TGGCGAGCGA CTACGAACCC GCCCGCGACT ATGCCGAACG GCGCGGCATC ACCTTCCGCG AGCGCGTGGA CCGGGTCGTC GAGATTGTCC GCCAAGTGCC CGAAAAGGTG CGCGGCATGT TCGACGGGTT GCGCCTGCCC GCCGAGAGCG AACAGGGGCC GGAAAGGAAG GTAGAGGAAG ACCCCGAGGA AGCTTTGCGC CGCTCCCGTG GCCGGGCGCT CGTCCGCCAT GCCCGCGCCG TCGATGCGAT CTTCACGGCG CAGGACCAGG GCGGCAGGGC CAGCCCCGAT CAGATCAGGG AATTGCAGGA GGCGCGCCAG CGGTTCGAGG AGGTGCGCCC CTACGGCTCG CATGACGCTG AGGCGGCCTA CAAGAAAAAC CCGGAGCTTG CGGCGGAGGC GGCGTTAGGC GACGCCCGGC GCGCGATCCG CGCCCTGCAA CTGGAAACCG AGCTGCGCAC CGAACCGGCC CGCCGCGCCG ACCGTTTCGT GGAACGCTGG CGAAATCTGC ACAGGGCCAG TGAGGAACGC TATGCGGCGG GCGACTATGC CGGCCATCGG GCCGCGCGGA CGGAAATGGG GAACATGGCG CAGAGCCTCG AACGCGACCC GCAAATGGAG TCCCTTCTGG CGGGCCGCAA GCGGGAACTC GGCATCTCAT TCGATTCGGG GATGAGCGTC GGCCGCGACC TCACCCTCAC GTTCGGGCTC GGTCGGGGCC GGGGTCTCGG GTTGTAG
|
Protein sequence | MAIYHFSVQV IGRAAGRSAV AAAAYRSASR LRDNRLGRDQ DFSAKRGVVH SEVMLPENAP EEWHDREKLW NDVEAFEKRK DAQLCREVEF AIPREMPQAQ GVELARDFVK AEFVDRGMIA DLNVHCDMGA DGQPKPHAHV MLTMRSVDEN GFGPKARDWN RTEFVEHWRE RWADHVNERL AELDIDARID HRSLEAQGIG LEPQTKIGAP AQRIEAAGLE ADRAEDHRRI ARENGARIVA DPSTALDAIT RQQSTFTRRD LAMFAHRHSD GVEQFNEVMG AMRNAPDLVE LGKDGRGEER FTTREMIEAE QRLHRAAAMM AERERHEVSG RNREAALARA ADRGLVLSGE QAEALAHVTD GRDLGIVVGY AGTGKSAMLG VAREAWEDAG YTVRGAALSG IAAENLEGGS GIASRTIASM EHGWAQGRDL LTSRDVLVID EAGMVGTRQF ERVLSHAADA GAKVVLVGDP QQLQSIEAGA AFRSIHERHR GAEMGEVRRQ RQDWQRDATR DLATGRTGDA IHAYDAHGMV HEAASREQAR GELIDRWDRE RQANPDASRI ILTHTNAEVR ALNEVARGRM REAGNLGDDV YVAAERGARN FAPGDRVMFL ANERGLGVKN GTLGTIEQVN AQSMTVRTDD GRDVAFDLKD YNRIDHGYAA TIHKAQGMTV DRAHVLATPG MDAHGSYVAL SRHRDGMDLH YGRDDFASQD KLISVLSRDR AKDMASDYEP ARDYAERRGI TFRERVDRVV EIVRQVPEKV RGMFDGLRLP AESEQGPERK VEEDPEEALR RSRGRALVRH ARAVDAIFTA QDQGGRASPD QIRELQEARQ RFEEVRPYGS HDAEAAYKKN PELAAEAALG DARRAIRALQ LETELRTEPA RRADRFVERW RNLHRASEER YAAGDYAGHR AARTEMGNMA QSLERDPQME SLLAGRKREL GISFDSGMSV GRDLTLTFGL GRGRGLGL
|
| |