| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0164 |
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| Symbol | trmE |
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| ID | 5149180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 167919 |
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| End bp | 169256 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640555189 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001236367 |
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| Protein GI | 148251782 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.364073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATCCTC ATGATCAGAC CATTTTTGCG CTGTCCTCCG GACGCCCGCC GAGCGCGATC
GCTATCGTCA GGCTGTCGGG AGTTGGTGCC GGCCCGGCGC TTCAGACGCT GACAGGCAAG
CTGCCGCCGC CACGTCTGGC GACCCGCGCT TTGCTTCGCG ACGATCGTGG CGATCCGATC
GACGATGCGG TGGTGCTGTG GTTTCCGGGA CCGGCCAGCG CGACCGGTGA GGATGTCGCC
GAGCTACATG TCCATGGCAG TCGCGCCGTC ATCACCACGC TGGTCTCCCT GCTGTCAGCG
ATGCCGCAGA TGCGCGCCGC CGATCGCGGT GAATTCACCC GGCGTGCTTT CGAGAACGGC
AAGATCGATC TGACCGAGGC CGAAGGCCTT GATGATCTCA TTCATGCCGA CACCGACCGG
CAGCGGCGCC AGGCGCTCCG ACAGCTCAAG GGACTGCTCG GGGACAAAGC CCGGAGTTGG
CGCGACCAGA TCATCCAGGC GGCGGCACTG ATCGAAGCCG GCATCGACTT TGCCGATGAG
GGAGACGTAC CGGCGGAGCT GATCGCTCCG GCGCTCGCGT GGATCAGGCA ACTCCTGGCA
GAGATCGAGG AGGTCTTGGC GGCACAGGGC CGGGCGGAGC GGCTGCGCGA CGGGCTGACT
GTGGTCATCG CCGGACCGCC GAATGCCGGC AAGTCGACGC TGATGAATCA ACTGGCGCGG
CGCGAGGTCG CGATCGTGTC CCCGCATGCG GGCACGACGC GTGACCTGAT CGAGGTCGCG
CTCGACCTCG ACGGCTATCC GGTGACCGTG ATTGATACCG CGGGCATCCG GCAGACTGAT
GATCCAGTGG AGCAGGAGGG GGTCCGGCGT GCCAGGGACC GTGCGGCTCA AGCCGATCTC
GTGCTCTGGC TGACCGAAGA TGACCAGGCA GAGCTGGAGC GCCAGACTGA TGGTCCGATC
TGGTTCGTCC GTAACAAGAT CGATCTAATG ATCACGGAGC AGAGCGGAGC GATCTCTGTC
AGCCCCGAGA GTCCCGTGTT CGCGATCTCG GCGCGAAGCG GAGCAGGGAT GTCAGATCTG
CTGGAAGCTC TGGTCGGTTT CGCGCGGGAC TATTTCGGCG CGACGGAGCA CGGCCTGATC
ACGCGAGAGC GGCAGCGGAC GTGGCTGAGC GAGACCGCTG CAGCGCTTCG CCGGAGCATC
GCGGCCGTCG ACTTGGGCGA GGAGCTCGCA GCTGAGGAGC TGCGCATCGC CGCGCTTGCG
CTCGGACGTC TTTTGGGACG GGTGGATGTT GAGGATCTGC TCGACGTGAT CTTTCGCGAG
TTCTGTATCG GGAAGTAG
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| Protein sequence | MHPHDQTIFA LSSGRPPSAI AIVRLSGVGA GPALQTLTGK LPPPRLATRA LLRDDRGDPI
DDAVVLWFPG PASATGEDVA ELHVHGSRAV ITTLVSLLSA MPQMRAADRG EFTRRAFENG
KIDLTEAEGL DDLIHADTDR QRRQALRQLK GLLGDKARSW RDQIIQAAAL IEAGIDFADE
GDVPAELIAP ALAWIRQLLA EIEEVLAAQG RAERLRDGLT VVIAGPPNAG KSTLMNQLAR
REVAIVSPHA GTTRDLIEVA LDLDGYPVTV IDTAGIRQTD DPVEQEGVRR ARDRAAQADL
VLWLTEDDQA ELERQTDGPI WFVRNKIDLM ITEQSGAISV SPESPVFAIS ARSGAGMSDL
LEALVGFARD YFGATEHGLI TRERQRTWLS ETAAALRRSI AAVDLGEELA AEELRIAALA
LGRLLGRVDV EDLLDVIFRE FCIGK
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